The biology of time: dynamic responses of cell types to developmental, circadian and environmental cues
| Autor: | C. Robertson McClung, Kathleen Greenham, Gloria M. Coruzzi, Joseph R. Ecker, Joseph Swift |
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| Jazyk: | angličtina |
| Rok vydání: | 2021 |
| Předmět: |
Cell type
Circadian clock Arabidopsis Plant Science Biology Article Gene Expression Regulation Plant Circadian Clocks Genetics Tissue specific Circadian rhythm Sensory cue Time sensitive Plant Proteins Regulation of gene expression fungi food and beverages Gene Expression Regulation Developmental Cell Biology Plants Plant Leaves Single cell sequencing Protein Biosynthesis Cues Neuroscience |
| Zdroj: | Plant J |
| Popis: | As sessile organisms, plants are finely tuned to respond dynamically to developmental, circadian, and environmental cues. Genome-wide studies investigating these types of cues have uncovered the intrinsically different ways they can impact gene expression over time. Recent advances in single cell sequencing and time-based bioinformatic algorithms are now beginning to reveal the dynamics of these time-based responses within individual cells and plant tissues. Here, we review what these techniques have revealed about the spatiotemporal nature of gene regulation, paying particular attention to the three distinct ways in which plant tissues are time sensitive. (i) First, we discuss how studying plant cell identity can reveal developmental trajectories hidden in pseudotime. (ii) Next, we present evidence which indicates that plant cell types keep their own local time through tissue specific regulation of the circadian clock. (iii) Finally, we review what determines the speed of environmental signaling responses, and how they can be contingent on developmental and circadian time. By these means, this review sheds light on how these different scales of time-based responses can act with tissue and cell-type specificity to elicit changes in whole plant systems. |
| Databáze: | OpenAIRE |
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