Molecular and epidemiological features of gastroenteritis outbreaks involving genogroup I norovirus in Victoria, Australia, 2002-2010
| Autor: | Osunneye Oluwatoyin, Rizmina Sameer, Kristie J. Witlox, Leesa D. Bruggink, John Marshall |
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| Rok vydání: | 2012 |
| Předmět: |
medicine.medical_specialty
Genes Viral Genotype Victoria Biology medicine.disease_cause Disease Outbreaks Microbiology Feces Open Reading Frames Virology Epidemiology medicine Humans Phylogeny Caliciviridae Infections Cross Infection Molecular Epidemiology Molecular epidemiology Norovirus Outbreak Sequence Analysis DNA Gastroenteritis Community-Acquired Infections Molecular Typing Infectious Diseases Healthcare settings RNA Viral Molecular virology |
| Zdroj: | Journal of Medical Virology. 84:1437-1448 |
| ISSN: | 0146-6615 |
| DOI: | 10.1002/jmv.23342 |
| Popis: | GI noroviruses are relatively rare and systematic studies of the molecular epidemiology of GI norovirus outbreaks are lacking. The current study examined the molecular virology of GI norovirus outbreaks in Victoria, Australia (2002–2010). Of 1,617 norovirus outbreaks identified, 69 (4.3%) were associated with GI norovirus alone, 1,540 (95.2%) with GII norovirus alone and 8 (0.5%) with GI + GII. Some differences between GI and GII outbreak epidemiology were found. GI outbreaks peaked in the 2-month period November/December whereas GII outbreaks peaked in the 2-month period September/October and GI norovirus outbreaks were significantly more common in non-healthcare settings (37.7%) than GII outbreaks (9.5%). ORF 1/ORF 2 genotypes found in the 69 outbreaks involving GI norovirus alone were: GI.2/GI.2, 7 outbreaks; GI.2/GI.6, 18 outbreaks; GI.3b/GI.3, 14 outbreaks; GI.4/GI.4, 21 outbreaks; GI.8/GI.8, one outbreak; GI.d/GI.3, four outbreaks; and GI.e/GI.13, one outbreak. The current study appears to be the first to have identified the recombinant form, GI.2/GI.6. Whereas GI.2/GI.6 and GI.3b/GI.3 outbreaks occurred with equal frequency in both healthcare and non-healthcare settings, GI.4/GI.4 occurred predominantly in healthcare settings. GI ORF 1/ORF 2 genotypes found in the eight outbreaks involving GI + GII norovirus were GI.2/GI.6, GI.3b/GI.3, and GI.4/GI.4, indicating GI genotypes in GI + GII outbreaks were similar to those found in outbreaks involving GI alone. Apparent differences in the evolution of different GI genotypes were noted. GI.2/GI.2, GI.2/GI.6, and GI.4/GI.4 strains tended to undergo periodic shifts in nucleotide sequence whereas various GI.3b/GI.3 strains tended to circulate simultaneously. J. Med. Virol. 84:1437–1448, 2012. © 2012 Wiley Periodicals, Inc. |
| Databáze: | OpenAIRE |
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