The genetic architecture of teosinte catalyzed and constrained maize domestication
| Autor: | Qi Sun, Peter J. Bradbury, John Doebley, Maria Cinta Romay, Bode A. Olukolu, Alessandra M. York, Wei Xue, José de Jesús Sánchez-González, Luis Fernando Samayoa, Michael R. Tuholski, Michael A. Neumeyer, Chin Jian Yang, James B. Holland, Edward S. Buckler, Lora L. Daskalska, Jeffrey C. Glaubitz, Weidong Wang |
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| Rok vydání: | 2019 |
| Předmět: |
0106 biological sciences
Evolution Quantitative Trait Loci Population selection Genomics teosinte Biology Quantitative trait locus maize Zea mays 01 natural sciences Chromosomes Plant Domestication Evolution Molecular 03 medical and health sciences Phylogenetics Genetic variation Selection Genetic education Plant Proteins 030304 developmental biology 2. Zero hunger 0303 health sciences education.field_of_study Multidisciplinary fungi food and beverages Chromosome Mapping Agriculture Biological Sciences 15. Life on land Genetic architecture Genetics Population Phenotype PNAS Plus Evolutionary biology Trait Edible Grain 010606 plant biology & botany |
| Zdroj: | Proceedings of the National Academy of Sciences of the United States of America |
| ISSN: | 1091-6490 0027-8424 |
| DOI: | 10.1073/pnas.1820997116 |
| Popis: | Significance Crop domestication is a well-established system for understanding evolution. We interrogated the genetic architecture of maize domestication from a quantitative genetics perspective. We analyzed domestication-related traits in a maize landrace and a population of its ancestor, teosinte. We observed strong divergence in the underlying genetic architecture including change in the genetic correlations among traits. Despite striking divergence, selection intensities were low for all traits, indicating that selection under domestication can be weaker than natural selection. Analyses suggest total grain weight per plant was not improved and that genetic correlations placed considerable constraint on selection. We hope our results will motivate crop evolutionists to perform similar work in other crops. The process of evolution under domestication has been studied using phylogenetics, population genetics–genomics, quantitative trait locus (QTL) mapping, gene expression assays, and archaeology. Here, we apply an evolutionary quantitative genetic approach to understand the constraints imposed by the genetic architecture of trait variation in teosinte, the wild ancestor of maize, and the consequences of domestication on genetic architecture. Using modern teosinte and maize landrace populations as proxies for the ancestor and domesticate, respectively, we estimated heritabilities, additive and dominance genetic variances, genetic-by-environment variances, genetic correlations, and genetic covariances for 18 domestication-related traits using realized genomic relationships estimated from genome-wide markers. We found a reduction in heritabilities across most traits, and the reduction is stronger in reproductive traits (size and numbers of grains and ears) than vegetative traits. We observed larger depletion in additive genetic variance than dominance genetic variance. Selection intensities during domestication were weak for all traits, with reproductive traits showing the highest values. For 17 of 18 traits, neutral divergence is rejected, suggesting they were targets of selection during domestication. Yield (total grain weight) per plant is the sole trait that selection does not appear to have improved in maize relative to teosinte. From a multivariate evolution perspective, we identified a strong, nonneutral divergence between teosinte and maize landrace genetic variance–covariance matrices (G-matrices). While the structure of G-matrix in teosinte posed considerable genetic constraint on early domestication, the maize landrace G-matrix indicates that the degree of constraint is more unfavorable for further evolution along the same trajectory. |
| Databáze: | OpenAIRE |
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