Expanding the Orthologous Matrix (OMA) programmatic interfaces: REST API and the OmaDB packages for R and Python: [version 2; peer review: 2 approved]

Autor:	Kaleb, Klara, Warwick Vesztrocy, Alex, Altenhoff, Adrian Michael, Dessimoz, Christophe
Jazyk:	angličtina
Rok vydání:	2019
Předmět:	orthologs REST lcsh:R lcsh:Medicine comparative genomics bioconductor paralogs hierarchical orthologous groups orthologous matrix oma API R python lcsh:Q lcsh:Science
Zdroj:	F1000Research, 8 F1000Research, Vol 8 (2019)
ISSN:	2046-1402
Popis:	The Orthologous Matrix (OMA) is a well-established resource to identify orthologs among many genomes. Here, we present two recent additions to its programmatic interface, namely a REST API, and user-friendly R and Python packages called OmaDB. These should further facilitate the incorporation of OMA data into computational scripts and pipelines. The REST API can be freely accessed at https://omabrowser.org/api. The R OmaDB package is available as part of Bioconductor at http://bioconductor.org/packages/OmaDB/, and the omadb Python package is available from the Python Package Index (PyPI) at https://pypi.org/project/omadb/. F1000Research, 8 ISSN:2046-1402
Databáze:	OpenAIRE
Externí odkaz:	https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6d3ffd38c8f8009f48355ef15dc1374e https://hdl.handle.net/20.500.11850/419621 Zobrazit plný text záznamu