| Autor: |
Hengyi Xie, Ana Rojas, Gia G. Maisuradze, George Khelashvili |
| Rok vydání: |
2022 |
| Předmět: |
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| Zdroj: |
ACS Chem Neurosci |
| ISSN: |
1948-7193 |
| Popis: |
Abnormal aggregation of the Amyloid β (Aβ) peptides into fibrils play a critical role in the development of Alzheimer’s disease. A two-stage “dock-lock” model have been proposed for the Aβ fibril elongation process. However, the mechanisms of the Aβ monomer-fibril binding process have not been elucidated with the necessary molecular-level precision, and so it remains unclear how the lock phase dynamics leads to the overall in-register binding of the Aβ monomer onto the fibril. To gain mechanistic insight into this critical step during the fibril elongation process we used molecular dynamics (MD) simulations with a physics-based coarse-grained UNited-RESidue (UNRES) force field we sampled extensively the dynamics of the lock phase process, in which a fibril-bound Aβ((9–40)) peptide rearranges to establish the native docking conformation. Analysis of the MD trajectories with Markov State Models was used to quantify the kinetics of the rearrangement process and the most probable pathways leading to the overall native docking conformation of the incoming peptide. These revealed a key intermediate state in which an intra-monomer hairpin is formed between the central core amyloidogenic patch (18)VFFA(21) and the C-terminal hydrophobic patch (34)LMVG(37). This hairpin structure is highly favored as a transition state during the lock phase of the fibril elongation. We propose a molecular mechanism for the facilitation of the Aβ fibril elongation by amyloidogenic hydrophobic patches. |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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