CAP: conformation angles package—displaying the conformation angles of side chains in proteins
| Autor: | S. S. Sheik, Krishna Sekar, Prasanna Sundararajan, V. Shanthi |
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| Rok vydání: | 2003 |
| Předmět: |
Models
Molecular Statistics and Probability Diffraction Materials science Protein Conformation Information Storage and Retrieval Percentage distribution Biochemistry User-Computer Interface Protein structure Leucine Supercomputer Education Research Centre Side chain Single amino acid Amino Acids Databases Protein Molecular Biology Crystallography Proteins computer.file_format Nuclear magnetic resonance spectroscopy Protein Data Bank Protein Structure Tertiary Computer Science Applications Computational Mathematics Computational Theory and Mathematics Database Management Systems Plant Lectins computer Software |
| Zdroj: | Bioinformatics. 19:1043-1044 |
| ISSN: | 1367-4811 1367-4803 |
| DOI: | 10.1093/bioinformatics/btg125 |
| Popis: | Summary: A graphics package has been developed to display all side chain conformation angles of the user selected residue in a given protein structure. The proposed package is incorporated with all the protein structures (solved using X-ray diffraction and NMR spectroscopy) available in the Protein Data Bank. The package displays the multiple conformations adopted by a single amino acid residue whose structure is solved and refined at very high resolution. In addition, it shows the percentage distribution of the side chain conformation angles in different rotameric states. Availability: http://144.16.71.146/cap/ Contact: sekar@physics.iisc.ernet.in * To whom correspondence should be addressed. |
| Databáze: | OpenAIRE |
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