Unraveling the complexity of transcriptomic, metabolomic and quality environmental response of tomato fruit
| Autor: | Francesca Ferriello, Luca Tardella, Amalia Barone, Adriana Sacco, Alessandra Dal Molin, Luigi Frusciante, Gianfranco Diretto, Maria Raffaella Ercolano, Massimo Delledonne, Rossella Di Monaco, Daniela D’Esposito, Giovanni Giuliano, Andrea Minio, Silvana Cavella |
|---|---|
| Přispěvatelé: | Diretto, G., D'Esposito, Daniela, Ferriello, Francesca, Molin, Alessandra Dal, Diretto, Gianfranco, Sacco, Adriana, Minio, Andrea, Barone, Amalia, DI MONACO, Rossella, Cavella, Silvana, Tardella, Luca, Giuliano, Giovanni, Delledonne, Massimo, Frusciante, Luigi, Ercolano, Maria |
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: |
0106 biological sciences
0301 basic medicine Environment Fruit quality Metabolome Network Plasticity Sensorial attributes Solanum lycopersicum Transcriptome Genotype Systems biology Organoleptic Gene Dosage Plant Science 01 natural sciences Genome 03 medical and health sciences Metabolomics Cell Wall Gene Expression Regulation Plant lcsh:Botany Food Quality Sensorial attribute Gene 2. Zero hunger Genetics biology business.industry Systems Biology fungi food and beverages biology.organism_classification lcsh:QK1-989 Biotechnology 030104 developmental biology Italy Fruit Trans-acting Solanum business Genome Plant 010606 plant biology & botany Transcription Factors Research Article |
| Zdroj: | BMC Plant Biology Europe PubMed Central BMC Plant Biology, Vol 17, Iss 1, Pp 1-18 (2017) |
| Popis: | Background The environment has a profound influence on the organoleptic quality of tomato (Solanum lycopersicum) fruit, the extent of which depends on a well-regulated and dynamic interplay among genes, metabolites and sensorial attributes. We used a systems biology approach to elucidate the complex interacting mechanisms regulating the plasticity of sensorial traits. To investigate environmentally challenged transcriptomic and metabolomic remodeling and evaluate the organoleptic consequences of such variations we grown three tomato varieties, Heinz 1706, whose genome was sequenced as reference and two ?local? ones, San Marzano and Vesuviano in two different locations of Campania region (Italy). Results Responses to environment were more pronounced in the two ?local? genotypes, rather than in the Heinz 1706. The overall genetic composition of each genotype, acting in trans, modulated the specific response to environment. Duplicated genes and transcription factors, establishing different number of network connections by gaining or losing links, play a dominant role in shaping organoleptic profile. The fundamental role of cell wall metabolism in tuning all the quality attributes, including the sensorial perception, was also highlighted. Conclusions Although similar fruit-related quality processes are activated in the same environment, different tomato genotypes follow distinct transcriptomic, metabolomic and sensorial trajectories depending on their own genetic makeup. Electronic supplementary material The online version of this article (doi:10.1186/s12870-017-1008-4) contains supplementary material, which is available to authorized users. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|