Additional file 1 of Ancestry-specific associations identified in genome-wide combined-phenotype study of red blood cell traits emphasize benefits of diversity in genomics

Autor: Hodonsky, Chani J., Baldassari, Antoine R., Bien, Stephanie A., Raffield, Laura M., Highland, Heather M., Sitlani, Colleen M., Wojcik, Genevieve L., Tao, Ran, Marielisa Graff, Weihong Tang, Thyagarajan, Bharat, Buyske, Steve, Fornage, Myriam, Hindorff, Lucia A., Li, Yun, Lin, Danyu, Reiner, Alex P., North, Kari E., Loos, Ruth J. F., Kooperberg, Charles, Avery, Christy L.
Rok vydání: 2020
ISSN: 1455-4879
DOI: 10.6084/m9.figshare.11986170
Popis: Additional file 1: Figure S1. Manhattan and Quantile-Quantile plots for individual RBC traits in the total study population. In Manhattan plots, previously reported loci (published index SNP reported p 500 kb from a previously reported significant variant for any RBC trait (blue) are both shown. Figure S2. Evidence of genetic associations shared across correlated RBC traits. X-axis: chromosome and position (top) and rsid (bottom) for each combined-phenotype lead SNP. Y-axis: trait-specific –log10(p-values), with increased intensity representing higher significance, for each combined-phenotype lead SNP. P-values scaled to a maximum –log10 value of 25 for improved interpretation. Figure S3. Locus-Zoom plots of the association between rs6573766 and RBCC in PAGE African Americans on an African American LD background (A), Hispanics/Latinos on a Hispanic/Latino LD background (B), and European Americans on a European LD background (C). Each point represents one SNP; x-axis: increasing position on chromosome 14 left to right; y-axis: -log10(p-value) of the association with MCH SNP correlation with the lead SNP (r2) is colored according to the legend in Figure S3A. Annotated Refseq genes proximal to the lead SNP are shown by position above the X axis. Figure S4. Locus-Zoom plot of the association between MCH (A) and MCV (B) and rs145548796 in the total MEGA study population. Each point represents one SNP; x-axis: increasing position on chromosome 6 left to right; y-axis: -log10(p-value) of the association with MCH SNP correlation with the lead SNP (r2) is colored according to the legend in Figure S4A. Annotated Refseq genes proximal to the lead SNP are shown by position above the X axis.
Databáze: OpenAIRE