A deep survey of alternative splicing in grape reveals changes in the splicing machinery related to tissue, stress condition and genotype

Autor: Claudio Forcato, Claudio Bonghi, Rosanna Zimbello, Michela D'Angelo, Massimiliano Corso, Alessandro Vannozzi, Margherita Lucchin, Nicola Vitulo, Giorgio Valle, Davide Campagna, Andrea Telatin, Elisa Corteggiani Carpinelli
Přispěvatelé: CRIBI (CRIBI), Universita degli Studi di Padova, Laboratoire de Physiologie et de Génétique Moléculaire des Plantes, Université libre de Bruxelles (ULB), Department of Agronomy, Food, Natural Resources, Animals and Environment (DAFNAE)
Rok vydání: 2013
Předmět:
RNA
Untranslated
Organ Specificity -- genetics
Plant Science
Transcriptome
Stress
Physiological -- genetics
Gene Expression Regulation
Plant
Databases
Genetic
Protein Isoforms
Vitis
Alternative splicing
RNAseq
grapevine
Genetics
Regulation of gene expression
Principal Component Analysis
Untranslated
[SDV.BBM.MN]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Molecular Networks [q-bio.MN]
Sciences bio-médicales et agricoles
Adaptation
Physiological
MicroRNAs -- genetics -- metabolism
Organ Specificity
RNA splicing
Grapevine
Databases
Nucleic Acid
Research Article
Gene isoform
Adaptation
Physiological -- genetics
Genotype
Evolution
Physiological
Gene prediction
Alternative Splicing -- genetics
Vitis -- genetics
[SDV.BID]Life Sciences [q-bio]/Biodiversity
Biology
Stress
Genes
Plant
Evolution
Molecular
Databases
Genetic
Stress
Physiological
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Genomics [q-bio.GN]
[SDV.BV]Life Sciences [q-bio]/Vegetal Biology
[SDV.BBM]Life Sciences [q-bio]/Biochemistry
Molecular Biology
Adaptation
Gene
Protein Isoforms -- genetics -- metabolism
Nucleic Acid
Arabidopsis Proteins
RNA
Untranslated -- genetics -- metabolism
Intron
Arabidopsis Proteins -- genetics -- metabolism
Molecular
Plant
Alternative Splicing
MicroRNAs
[SDV.BV.AP]Life Sciences [q-bio]/Vegetal Biology/Plant breeding
Gene Expression Regulation
Genes
RNA
Zdroj: BMC Plant Biology
BMC Plant Biology, BioMed Central, 2014, 14 (1), pp.99. ⟨10.1186/1471-2229-14-99⟩
BMC plant biology, 14
ISSN: 1471-2229
DOI: 10.1186/1471-2229-14-99⟩
Popis: Alternative splicing (AS) significantly enhances transcriptome complexity. It is differentially regulated in a wide variety of cell types and plays a role in several cellular processes. Here we describe a detailed survey of alternative splicing in grape based on 124 SOLiD RNAseq analyses from different tissues, stress conditions and genotypes.
info:eu-repo/semantics/published
Databáze: OpenAIRE
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