Mitochondrial iron transporter (MIT) gene in potato (Solanum tuberosum): comparative bioinformatics, physiological and expression analyses in response to drought and salinity
| Autor: | Firat, Kurt, Baris, Kurt, Ertugrul, Filiz, Kubra, Yildiz, M Aydın, Akbudak |
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| Rok vydání: | 2022 |
| Předmět: |
Salinity
Iron Arabidopsis Metals and Alloys Computational Biology Membrane Transport Proteins Plants General Biochemistry Genetics and Molecular Biology Droughts Prediction Acid Mechanisms Tolerance Genotypes Enzymes Leaves Sites Sumo Mitoferrin Mitochondrial carrier family Iron homeostasis In silico analyses Biomaterials Gene Expression Regulation Plant Stress Physiological General Agricultural and Biological Sciences Phylogeny Plant Proteins Solanum tuberosum |
| Zdroj: | BioMetals. 35:875-887 |
| ISSN: | 1572-8773 0966-0844 |
| DOI: | 10.1007/s10534-022-00411-7 |
| Popis: | Mitochondrial iron transporter (MIT) genes are essential for mitochondrial acquisition/import of iron and vital to proper functioning of mitochondria. Unlike other organisms, research on the MITs in plants is limited. The present study provides comparative bioinformatics assays for the potato MIT gene (StMIT) as well as gene expression analyses. The phylogenetic analyses revealed monocots-dicot divergence in MIT proteins and it was also found clade specific motif diversity. In addition, docking analyses indicated that Asp172 and Gly100 residues to be identified as the closest residues binding to ferrous iron. The percentage of structure overlap of the StMIT 3D protein model with Arabidopsis, maize and rice MIT proteins was found between 80.18% and 85.71%. The transcript analyses exhibited that the expression of StMIT was triggered under drought and salinity stresses. The findings of the present study would provide valuable leads for further studies targeting specifically the MIT gene and generally the plant iron metabolism. |
| Databáze: | OpenAIRE |
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