Vibrio tetraodonis sp. nov.:: genomic insights on the secondary metabolites repertoire
| Autor: | Cristiane C. Thompson, Livia Vidal, Fabiano L. Thompson, Diogo A. Tschoeke, Bruno S. Silva, Gizele D. Garcia, Grasiele Ribeiro Lopes, Hannah K Mattsson, Gustavo P R Azevedo, Luciane A. Chimetto Tonon, Koko Otsuki, Bruno Gomez-Gil, Mariana E. Campeão, Jean Swings |
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| Rok vydání: | 2020 |
| Předmět: |
Whole genome sequencing
Genetics 0303 health sciences biology 030306 microbiology General Medicine biology.organism_classification Biochemistry Microbiology Genome Vibrio 03 medical and health sciences ECOLOGIA Microbial ecology Sphoeroides Taxonomy (biology) Tetraodontidae Molecular Biology Gene 030304 developmental biology |
| Zdroj: | Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual) Universidade de São Paulo (USP) instacron:USP |
| Popis: | Description of a Gram-negative, motile, circular-shaped bacterial strain, designated A511T obtained from the skin of the pufferfish Sphoeroides spengleri (Family Tetraodontidae), collected in Arraial do Cabo, Brazil. Optimum growth occurs at 20–28 °C in the presence of 3% NaCl. The genome sequence of the novel isolate consisted of 4.36 Mb, 3,976 coding genes and G + C content of 42.5%. Genomic taxonomy analyses based on average amino acid (AAI), genome-to-genome-distance (GGDH) and phylogenetic reconstruction placed A511T (= CBAS 712T = CAIM 1939T) into a new species of the genus Vibrio (Vibrio tetraodonis sp. nov.). The genome of the novel species contains eight genes clusters (~ 183.9 Kbp in total) coding for different types of bioactive compounds that hint to several possible ecological roles in the pufferfish host. |
| Databáze: | OpenAIRE |
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