The complete chloroplast genome of Dendrobium nobile, an endangered medicinal orchid from north-east India and its comparison with related Dendrobium species
| Autor: | Santosh Vishwakarma, Pramod Tandon, Durai Sundar, Debasis Dash, Ruchishree Konhar, Devendra Kumar Biswal, Manish Debnath, Atanu Bhattacharjee |
|---|---|
| Rok vydání: | 2019 |
| Předmět: |
RNA editing
Orchidaceae General Neuroscience lcsh:R Endangered species SNP lcsh:Medicine General Medicine Biology biology.organism_classification Chloroplast Genome General Biochemistry Genetics and Molecular Biology Dendrobium nobile DNA sequencing Dendrobium Genus Evolutionary biology Next generation sequencing RefSeq Codon usage General Agricultural and Biological Sciences |
| Zdroj: | PeerJ, Vol 7, p e7756 (2019) |
| ISSN: | 2167-8359 |
| Popis: | The medicinal orchid genus Dendrobium belonging to the Orchidaceae family is a huge genus comprising about 800–1,500 species. To better illustrate the species status in the genus Dendrobium, a comparative analysis of 33 available chloroplast genomes retrieved from NCBI RefSeq database was compared with that of the first complete chloroplast genome of D. nobile from north-east India based on next-generation sequencing methods (Illumina HiSeq 2500-PE150). Our results provide comparative chloroplast genomic information for taxonomical identification, alignment-free phylogenomic inference and other statistical features of Dendrobium plastomes, which can also provide valuable information on their mutational events and sequence divergence. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|