Transcriptome and proteome dynamics in larvae of the barnacle Balanus Amphitrite from the Red Sea
| Autor: | Taewoo Ryu, Huoming Zhang, Kondethimmanahalli H. Chandramouli, Timothy Ravasi, Yanal Ghosheh, Pei-Yuan Qian, Loqmane Seridi, Sarah Al-Aqeel |
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| Jazyk: | angličtina |
| Rok vydání: | 2015 |
| Předmět: |
Proteomics
Intertidal zone Zoology Red sea B. amphitrite Balanus Transcriptome Barnacle Open Reading Frames Thoracica Databases Genetic Genetics Animals Adaptation Transcriptomics Indian Ocean biology Ecology Gene Expression Profiling fungi Gene Expression Regulation Developmental Sequence Analysis DNA biology.organism_classification Crustacean Larva Proteome Biotechnology Research Article |
| Zdroj: | BMC Genomics |
| ISSN: | 1471-2164 |
| Popis: | Background The barnacle Balanus amphitrite is widely distributed in marine shallow and tidal waters, and has significant economic and ecological importance. Nauplii, the first larval stage of most crustaceans, are extremely abundant in the marine zooplankton. However, a lack of genome information has hindered elucidation of the molecular mechanisms of development, settlement and survival strategies in extreme marine environments. We sequenced and constructed the genome dataset for nauplii to obtain comprehensive larval genetic information. We also investigated iTRAQ-based protein expression patterns to reveal the molecular basis of nauplii development, and to gain information on larval survival strategies in the Red Sea marine environment. Results A nauplii larval transcript dataset, containing 92,117 predicted open reading frames (ORFs), was constructed and used as a reference for the proteome analysis. Genes related to translation, oxidative phosphorylation and cytoskeletal development were highly abundant. We observed remarkable plasticity in the proteome of Red Sea larvae. The proteins associated with development, stress responses and osmoregulation showed the most significant differences between the two larval populations studied. The synergistic overexpression of heat shock and osmoregulatory proteins may facilitate larval survival in intertidal habitats or in extreme environments. Conclusions We presented, for the first time, comprehensive transcriptome and proteome datasets for Red Sea nauplii. The datasets provide a foundation for future investigations focused on the survival mechanisms of other crustaceans in extreme marine environments. Electronic supplementary material The online version of this article (doi:10.1186/s12864-015-2262-1) contains supplementary material, which is available to authorized users. |
| Databáze: | OpenAIRE |
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