The UCSC Genome Browser database: 2014 update
| Autor: | Kate R. Rosenbloom, Angie S. Hinrichs, Donna Karolchik, Brooke Rhead, Luvina Guruvadoo, Cricket A. Sloan, W. James Kent, Timothy R. Dreszer, Mark Diekhans, Jonathan Casper, Steven G. Heitner, Maximilian Haeussler, Rachel A. Harte, Ann S. Zweig, Galt P. Barber, Brian T. Lee, Matthew L. Speir, Melissa S. Cline, Chin H. Li, Pauline A. Fujita, Robert M. Kuhn, Hiram Clawson, David Haussler, Katrina Learned, Brian J. Raney |
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| Rok vydání: | 2014 |
| Předmět: |
Genomics
Genome browser Biology computer.software_genre ENCODE Genome Polymorphism Single Nucleotide 03 medical and health sciences Annotation Mice Databases 0302 clinical medicine Genetic Information and Computing Sciences Databases Genetic Genetics Animals Humans Polymorphism Alleles 030304 developmental biology 0303 health sciences Internet Database Genome Human Human Genome Molecular Sequence Annotation V. Human genome model organisms comparative genomics Single Nucleotide Biological Sciences ComputingMethodologies_PATTERNRECOGNITION DECIPHER Generic health relevance computer Sequence Alignment 030217 neurology & neurosurgery Software Environmental Sciences Reference genome Human Developmental Biology |
| Zdroj: | Nucleic acids research, vol 42, iss Database issue Nucleic Acids Research |
| Popis: | The University of California Santa Cruz (UCSC) Genome Browser (http://genome.ucsc.edu) offers online public access to a growing database of genomic sequence and annotations for a large collection of organisms, primarily vertebrates, with an emphasis on the human and mouse genomes. The Browser's web-based tools provide an integrated environment for visualizing, comparing, analysing and sharing both publicly available and user-generated genomic data sets. As of September 2013, the database contained genomic sequence and a basic set of annotation 'tracks' for ∼90 organisms. Significant new annotations include a 60-species multiple alignment conservation track on the mouse, updated UCSC Genes tracks for human and mouse, and several new sets of variation and ENCODE data. New software tools include a Variant Annotation Integrator that returns predicted functional effects of a set of variants uploaded as a custom track, an extension to UCSC Genes that displays haplotype alleles for protein-coding genes and an expansion of data hubs that includes the capability to display remotely hosted user-provided assembly sequence in addition to annotation data. To improve European access, we have added a Genome Browser mirror (http://genome-euro.ucsc.edu) hosted at Bielefeld University in Germany. |
| Databáze: | OpenAIRE |
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