The Genome Database for Rosaceae (GDR): year 10 update
| Autor: | Il-Hyung Cho, Ping Zheng, Mercy A. Olmstead, Chun-Huai Cheng, Dorrie Main, Cameron Peace, Sushan Ru, Kate Evans, Taein Lee, Lukas A. Mueller, Aureliano Bombarely, Sook Jung, Jing Yu, Anna V. Blenda, Albert G. Abbott, Stephen P. Ficklin |
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| Jazyk: | angličtina |
| Rok vydání: | 2013 |
| Předmět: |
0106 biological sciences
InterPro Genetic Markers Quantitative Trait Loci UniGene Genomics Locus (genetics) Computational biology Biology Quantitative trait locus Breeding Genes Plant 01 natural sciences Genome 03 medical and health sciences Databases Genetic Genetics Rosaceae 030304 developmental biology Synteny 2. Zero hunger 0303 health sciences Genetic diversity Internet Genetic Variation VII. Plant databases Genome Plant 010606 plant biology & botany |
| Zdroj: | Nucleic Acids Research |
| ISSN: | 1362-4962 0305-1048 |
| Popis: | The Genome Database for Rosaceae (GDR, http:/www.rosaceae.org), the long-standing central repository and data mining resource for Rosaceae research, has been enhanced with new genomic, genetic and breeding data, and improved functionality. Whole genome sequences of apple, peach and strawberry are available to browse or download with a range of annotations, including gene model predictions, aligned transcripts, repetitive elements, polymorphisms, mapped genetic markers, mapped NCBI Rosaceae genes, gene homologs and association of InterPro protein domains, GO terms and Kyoto Encyclopedia of Genes and Genomes pathway terms. Annotated sequences can be queried using search interfaces and visualized using GBrowse. New expressed sequence tag unigene sets are available for major genera, and Pathway data are available through FragariaCyc, AppleCyc and PeachCyc databases. Synteny among the three sequenced genomes can be viewed using GBrowse_Syn. New markers, genetic maps and extensively curated qualitative/Mendelian and quantitative trait loci are available. Phenotype and genotype data from breeding projects and genetic diversity projects are also included. Improved search pages are available for marker, trait locus, genetic diversity and publication data. New search tools for breeders enable selection comparison and assistance with breeding decision making. |
| Databáze: | OpenAIRE |
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