FAIR: A server for internal sequence repeats
| Autor: | Kanagaraj Sekar, Narayanan Chidambarathanu, Bazil Shaahul Hameed, Ramaswamy Senthilkumar, Rajadurai Karthik, Nirjhar Banerjee, Radhakrishnan Sabarinathan |
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| Rok vydání: | 2009 |
| Předmět: |
Whole genome sequencing
Biological data Computer science business.industry education General Medicine computer.file_format Computational biology Web Server DNA internal repeats sequence Protein Data Bank DNA sequencing World Wide Web ComputingMethodologies_PATTERNRECOGNITION Tandem repeat server Direct repeat The Internet business protein computer Sequence (medicine) |
| Zdroj: | Bioinformation |
| ISSN: | 0973-2063 |
| Popis: | An Internet computing server has been developed to identify all the occurrences of the internal sequence repeats in a protein and DNA sequences. Further, an option is provided for the users to check the occurrence(s) of the resultant sequence repeats in the other sequence and structure (Protein Data Bank) databases. The databases deployed in the proposed computing engine are up-to-date and thus the users will get the latest information available in the respective databases. The server is freely accessible over the World Wide Web (WWW). Availability: http://bioserver1.physics.iisc.ernet.in/fair/ Keywords: internal repeats, sequence, server, DNA, protein Background: With the advent of complete genome sequencing of many organisms, the volume of biological data has been increasing rapidly. Bioinformatics has hence emerged as an indispensable field to organize and assemble the plethora of biological data into a more comprehensive state. For instance, internal sequence repeats (without any gaps) are an integral part of DNA and protein sequences. In DNA sequences, these internal repeats present in multiple copies are referred as ‘direct repeat’. For example, the tandem repeats are repeated consecutively and act as markers for genomic sequence |
| Databáze: | OpenAIRE |
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