Substrate selectivity of Dengue and Zika virus NS5 polymerase towards 2′-modified nucleotide analogues

Autor: François Ferron, Bruno Canard, Supanee Potisopon, Veronique Fattorini, Barbara Selisko
Přispěvatelé: Architecture et fonction des macromolécules biologiques (AFMB), Centre National de la Recherche Scientifique (CNRS)-Aix Marseille Université (AMU)-Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA)-Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS), Architecture et fonction des macromolécules biologiques ( AFMB ), Centre National de la Recherche Scientifique ( CNRS ) -Aix Marseille Université ( AMU ) -Institut National de la Recherche Agronomique ( INRA )
Jazyk: angličtina
Rok vydání: 2017
Předmět:
0301 basic medicine
2′-modified NTP analogue
[SDV.BIO]Life Sciences [q-bio]/Biotechnology
NS5
viruses
[SDV.NEU.NB]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiology
Viral Nonstructural Proteins
Dengue virus
[ SDV.MP.BAC ] Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
medicine.disease_cause
RNA-dependent RNA polymerase
MESH: Dengue Virus
[SDV.IMM.II]Life Sciences [q-bio]/Immunology/Innate immunity
Substrate Specificity
Zika virus
Dengue fever
[ SDV.BBM.BC ] Life Sciences [q-bio]/Biochemistry
Molecular Biology/Biomolecules [q-bio.BM]

[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases
MESH : Dengue Virus
Elongation complex
[ SDV.BIBS ] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
MESH : Sofosbuvir
MESH : Viral Nonstructural Proteins
Polymerase
[SDV.MHEP.ME]Life Sciences [q-bio]/Human health and pathology/Emerging diseases
biology
MESH : Substrate Specificity
[ SDV.MHEP.ME ] Life Sciences [q-bio]/Human health and pathology/Emerging diseases
[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Structural Biology [q-bio.BM]

Nucleotides
virus diseases
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
3. Good health
MESH : Antiviral Agents
[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Biomolecules [q-bio.BM]

[ SDV.MHEP.MI ] Life Sciences [q-bio]/Human health and pathology/Infectious diseases
[SDV.BBM.BS]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Biomolecules [q-bio.BM]

[ SDV.NEU.NB ] Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Neurobiology
MESH : RNA Replicase
[SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology
MESH: RNA Replicase
MESH: Antiviral Agents
Hepatitis C virus
030106 microbiology
MESH: Zika Virus
Antiviral Agents
[ SDV.MP.VIR ] Life Sciences [q-bio]/Microbiology and Parasitology/Virology
03 medical and health sciences
Flaviviridae
Virology
medicine
Humans
[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry
Molecular Biology/Biochemistry [q-bio.BM]

Pharmacology
[ SDV.IMM.II ] Life Sciences [q-bio]/Immunology/Innate immunity
MESH: Humans
MESH : Humans
[ SDV.BIO ] Life Sciences [q-bio]/Biotechnology
[ SDV.SP.PHARMA ] Life Sciences [q-bio]/Pharmaceutical sciences/Pharmacology
MESH: Sofosbuvir
MESH : Zika Virus
biology.organism_classification
medicine.disease
[SDV.MP.BAC]Life Sciences [q-bio]/Microbiology and Parasitology/Bacteriology
MESH: Nucleotides
030104 developmental biology
biology.protein
[SDV.SP.PHARMA]Life Sciences [q-bio]/Pharmaceutical sciences/Pharmacology
MESH : Nucleotides
MESH: Viral Nonstructural Proteins
MESH: Substrate Specificity
Sofosbuvir
Nucleoside
[ SDV.BBM.BS ] Life Sciences [q-bio]/Biochemistry
Molecular Biology/Biomolecules [q-bio.BM]
Zdroj: Antiviral Research
Antiviral Research, Elsevier Masson, 2017, 140, pp.25-36. ⟨10.1016/j.antiviral.2016.12.021⟩
Antiviral Research, 2017, 140, pp.25-36. ⟨10.1016/j.antiviral.2016.12.021⟩
Antiviral Research, Elsevier Masson, 2017, 140, pp.25-36. 〈10.1016/j.antiviral.2016.12.021〉
ISSN: 0166-3542
DOI: 10.1016/j.antiviral.2016.12.021⟩
Popis: International audience; In targeting the essential viral RNA-dependent RNA-polymerase (RdRp), nucleotide analogues play a major role in antiviral therapies. In the Flaviviridae family, the hepatitis C virus (HCV) can be eradicated from chronically infected patients using a combination of drugs which generally include the 2'-modified uridine analogue Sofosbuvir, delivered as nucleotide prodrug. Dengue and Zika viruses are emerging flaviviruses whose RdRp is closely related to that of HCV, yet no nucleoside drug has been clinically approved for these acute infections. We have purified dengue and Zika virus full-length NS5, the viral RdRps, and used them to assemble a stable binary complex made of NS5 and virus-specific RNA primer/templates. The complex was used to assess the selectivity of NS5 towards nucleotide analogues bearing modifications at the 2'-position. We show that dengue and Zika virus RdRps exhibit the same discrimination pattern: 2'-O-Me > 2'-C-Me-2'-F > 2'-C-Me nucleoside analogues, unlike HCV RdRp for which the presence of the 2'-F is beneficial rendering the discrimination pattern 2'-O-Me > 2'-C-Me ≥ 2'-C-Me-2'-F. Both 2'-C-Me and 2'-C-Me-2'-F analogues act as non-obligate RNA chain terminators. The dengue and Zika NS5 nucleotide selectivity towards 2'-modified NTPs mirrors potency of the corresponding analogues in infected cell cultures.
Databáze: OpenAIRE