The completed genome sequence of the pathogenic ascomycete fungus Penicillium digitatum
| Autor: | Ruoxin Ruan, Mingshuang Wang, Hongye Li |
|---|---|
| Rok vydání: | 2020 |
| Předmět: |
0106 biological sciences
Secondary Metabolism Fungus Secondary metabolite 01 natural sciences Genome Fungal Proteins 03 medical and health sciences Genetics medicine Gene Pathogen Conserved Sequence 030304 developmental biology Whole genome sequencing 0303 health sciences Penicillium digitatum biology Whole Genome Sequencing Effector Penicillium Molecular Sequence Annotation biology.organism_classification Genome Fungal 010606 plant biology & botany medicine.drug |
| Zdroj: | Genomics. 113(2) |
| ISSN: | 1089-8646 |
| Popis: | P. digitatum, the causative agent of green mold, is one of the most destructive pathogens in the citrus industry. To facilitate basal researches on this important plant pathogen, here we report a finished genome sequence for P. digitatum strain PDW03 using a combination of Illumina, PacBio, and Hi-C sequencing technologies. The assembly comprised 6 chromosomes from telomere to telomere and encodes approximately 9000 proteins. Genomic re-analyses identified 302 Carbohydrate-active enzymes, 420 secreted proteins, and 39 secondary metabolite (SM) gene clusters. Furthermore, we found 10 fragmentary SM clusters in the P. digitatum PDW03 genome. Pangenome analysis based on 5 P. digitatum genomes available showed that conserved orthogroups account for ~68% of the species pangenome. Taken together, this fully completed P. digitatum genome will provide an optimum resource for further researches to investigate the driving forces of fungal host switch and effectors functioning in plant-pathogen interaction. |
| Databáze: | OpenAIRE |
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