AnatomySketch : An Extensible Open-Source Software Platform for Medical Image Analysis Algorithm Development
| Autor: | Mingrui Zhuang, Zhonghua Chen, Hongkai Wang, Hong Tang, Jiang He, Bobo Qin, Yuxin Yang, Xiaoxian Jin, Mengzhu Yu, Baitao Jin, Taijing Li, Lauri Kettunen |
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| Jazyk: | angličtina |
| Rok vydání: | 2022 |
| Předmět: |
visualisointi
ihmisen ja tietokoneen vuorovaikutus syväoppiminen lääketiede tekoäly user interaction image annotation User-Computer Interface Artificial Intelligence algoritmit ihminen-konejärjestelmät Humans Radiology Nuclear Medicine and imaging Radiological and Ultrasound Technology AnatomySketch algorithm development tietokoneohjelmat deep learning Magnetic Resonance Imaging Computer Science Applications koneoppiminen kuva-analyysi ohjelmointi medical image analysis Software Algorithms |
| Popis: | The development of medical image analysis algorithm is a complex process including the multiple sub-steps of model training, data visualization, human–computer interaction and graphical user interface (GUI) construction. To accelerate the development process, algorithm developers need a software tool to assist with all the sub-steps so that they can focus on the core function implementation. Especially, for the development of deep learning (DL) algorithms, a software tool supporting training data annotation and GUI construction is highly desired. In this work, we constructed AnatomySketch, an extensible open-source software platform with a friendly GUI and a flexible plugin interface for integrating user-developed algorithm modules. Through the plugin interface, algorithm developers can quickly create a GUI-based software prototype for clinical validation. AnatomySketch supports image annotation using the stylus and multi-touch screen. It also provides efficient tools to facilitate the collaboration between human experts and artificial intelligent (AI) algorithms. We demonstrate four exemplar applications including customized MRI image diagnosis, interactive lung lobe segmentation, human-AI collaborated spine disc segmentation and Annotation-by-iterative-Deep-Learning (AID) for DL model training. Using AnatomySketch, the gap between laboratory prototyping and clinical testing is bridged and the development of MIA algorithms is accelerated. The software is opened at https://github.com/DlutMedimgGroup/AnatomySketch-Software. |
| Databáze: | OpenAIRE |
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