Identification of sensitive and specific Avian influenza PCR methods through blind ring trials organized in the European Union
| Autor: | P. H. JØrgensen, Ilaria Capua, Marek J. Slomka, Véronique Jestin, G. Czifra, J.J.M. Voermans, K. J. Handberg, Guus Koch, Peter Thorén, A. Ejdersund, B. Z. Londt, Ian H. Brown, Jill Banks, Vivien J Coward, M. Cherbonnel-Pansart, G. Cattoli |
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| Jazyk: | angličtina |
| Rok vydání: | 2007 |
| Předmět: |
replication
rt-pcr CIDC - Divisie Virologie Library science Building and Construction Biology medicine.disease_cause Virology Influenza A virus subtype H5N1 Ring (diacritic) CVI - Divisie Virologie CIDC - Division Virology a viruses h5 medicine media_common.cataloged_instance Identification (biology) hemagglutinin European union CVI - Division Virology media_common |
| Zdroj: | Avian Diseases, 51, 227-234 Avian Diseases 51 (2007) |
| ISSN: | 0005-2086 |
| Popis: | Many different polymerase chain reaction (PCR) protocols have been used for detection and characterization of avian influenza (AI) virus isolates, mainly in research settings. Blind ring trials were conducted to determine the most sensitive and specific AI PCR protocols from a group of six European Union (EU) laboratories. In part 1 of the ring trial the laboratories used their own methods to test a panel of 10 reconstituted anonymized clinical specimens, and the best methods were selected as recommended protocols for part 2, in which 16 RNA specimens were tested. Both panels contained H5, H7, other AI subtypes, and non-AI avian pathogens. Outcomes included verification of 1) generic AI identification by highly sensitive and specific M-gene real-time PCR, and 2) conventional PCRs that were effective for detection and identification of H5 and H7 viruses. The latter included virus pathotyping by amplicon sequencing. The use of recommended protocols resulted in improved results among all six laboratories in part 2, reflecting increased sensitivity and specificity. This included improved H5/H7 identification and pathotyping observed among all laboratories in part 2. Details of these PCR methods are provided. In summary, this study has contributed to the harmonization of AI PCR protocols in EU laboratories and influenced AI laboratory contingency planning following the first European reports of H5N1 highly pathogenic AI during autumn 2005. |
| Databáze: | OpenAIRE |
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