Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity: Overview and Recommendations
| Autor: | Ulrike Herzschuh, Inger Greve Alsos, Marco J. L. Coolen, Marie-Eve Monchamp, Stefan Bertilsson, Daniel Ariztegui, Antony G. Brown, Laura S. Epp, Sarah E. Crump, Aurèle Vuillemin, Mikkel Winther Pedersen, Rebecca E. Garner, Irene Gregory-Eaves, David A. Walsh, Simon Belle, Kevin Nota, Youri Lammers, Kurt H. Kjær, Liv Heinecke, Camille Thomas, Fredrik Olajos, Joanna Gauthier, Göran Englund, Liisi Talas, Isabelle Domaizon, Joanne E. Littlefair, Charlotte Clarke, Eric Capo, Anan Ibrahim, Eske Willerslev, Didier Debroas, Johan Rydberg, Y. L. Wang, Fabien Arnaud, Trisha L. Spanbauer, Peter D. Heintzman, Pierre Taberlet, Gentile Francesco Ficetola, Dilli Prasad Rijal, Charline Giguet-Covex, Richard Bindler, Laura Parducci, Alexandra Rouillard, Kathleen R. Stoof-Leichsenring, Veljo Kisand, Heike Zimmermann, Christian Bigler, Anne van Woerkom, William D. Orsi, Erwan Messager |
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| Přispěvatelé: | Umeå University, Environnements, Dynamiques et Territoires de Montagne (EDYTEM), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS), The Arctic University of Norway [Tromsø, Norway] (UiT), University of Copenhagen = Københavns Universitet (UCPH), Uppsala University, Department of Earth & Environmental Sciences, Ludwig-Maximilians-Universität München, 80331 Munich, GeoBio-CenterLMU, Université de Genève = University of Geneva (UNIGE), Swedish University of Agricultural Sciences (SLU), School of Geography and Environmental Science, University of Southampton, Southampton SO17 1BJ, Institute of Arctic Alpine Research [University of Colorado Boulder] (INSTAAR), University of Colorado [Boulder], Laboratoire Microorganismes : Génome et Environnement (LMGE), Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne (UCA), Department of Environmental Science and Policy [Milano], Università degli Studi di Milano = University of Milan (UNIMI), Laboratoire d'Ecologie Alpine (LECA ), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes (UGA), Department of Biology [Concordia], Concordia University [Montreal], Groupe de recherche interuniversitaire en limnologie et en environnement aquatique - GRIL (Montréal, Canada), Université de Montréal (UdeM), Department of Biology [McGill University], McGill University = Université McGill [Montréal, Canada], ALFRED WEGENER INSTITUTE HELMHOLTZ CENTRE FOR POLAR AND MARINE RESEARCH POTSDAM DEU, Partenaires IRSTEA, Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)-Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Institute of Mathematics, University of Potsdam = Universität Potsdam, Institute for Environmental Sciences and Geography, University of Potsdam, Department of Biology, University of Konstanz, Konstanz, Germany, University of Tartu, School of Biological and Chemical Sciences, Queen Mary University of London, London, UK., Department of Environmental Sciences and Lake Erie Center, University of Toledo, Toledo, OH 43606, University of Cambridge [UK] (CAM), Western Australia Organic and Isotope Geochemistry Centre, School of Earth and Planetary Sciences, the Institute for Geoscience Research (TIGeR), Curtin University, Bentley 6102, Limnological Institute, Department of Biology, University of Konstanz, 78464 Konstanz, Centre Alpin de Recherche sur les Réseaux Trophiques et Ecosystèmes Limniques (CARRTEL), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Department of Environmental Biology, Sapienza University of Rome, Piazzale Aldo Moro 5, 00185 Roma, Italy, Knut & Alice Wallenberg Foundation2016.0083Swedish Research Council for Sustainable Development FormasFR-2016/0005Research Council of NorwayEuropean Commission250963/F20German Research Foundation (DFG)OR 417/1-1VU 94/1-1E, Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Department of Ecology and Environmental Science, Umeå University, Environnements, Dynamiques et Territoires de la Montagne (EDYTEM), Centre National de la Recherche Scientifique (CNRS)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), Department of Geosciences, UiT the Arctic University of Norway, 9019 Tromsø, Section for Geogenetics, GLOBE Institute, University of Copenhagen, 1350 Copenhagen, Department of Ecology and Genetics, the Evolutionary Biology Centre, Uppsala University, 752 36 Uppsala, The Arctic University Museum of Norway, UiT the Arctic University of Norway, 9010 Tromsø, Department of Earth Sciences, University of Geneva, University of Geneva [Switzerland], Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences, 75007 Uppsala, Institute of Arctic and Alpine Research (INSTAAR), Università degli Studi di Milano [Milano] (UNIMI), Department of Biology, Concordia University, Montréal, Department of Biology, McGill University, Montreal, Canada, University of Potsdam, Institute of Technology, University of Tartu, 50090 Tartu, Department of Zoology, University of Cambridge, Cambridge, United Kingdom, Willerslev, Eske [0000-0002-7081-6748], Apollo - University of Cambridge Repository |
| Jazyk: | angličtina |
| Rok vydání: | 2021 |
| Předmět: |
0106 biological sciences
Earth science [SDV]Life Sciences [q-bio] Biodiversity lake sediments Sedimentary DNA lcsh:GN281-289 Oceanografi hydrologi och vattenresurser Aquatic biota 01 natural sciences Paleolimnology paleoecology Oceanography Hydrology and Water Resources sedimentary ancient DNA Earth and Planetary Sciences (miscellaneous) ddc:550 lcsh:QE640-699 biodiversity 0303 health sciences paleolimnology Paleogenetics Lake sediments VDP::Mathematics and natural science: 400::Geosciences: 450::Stratigraphy and paleontology: 461 [SDE]Environmental Sciences lcsh:Human evolution ancient DNA VDP::Matematikk og Naturvitenskap: 400::Geofag: 450::Sedimentologi: 456 sedimentary DNA paleogenetics paleogenomics metabarcoding metagenomics 010603 evolutionary biology 03 medical and health sciences lcsh:Stratigraphy VDP::Mathematics and natural science: 400::Geosciences: 450::Sedimentology: 456 ddc:570 030304 developmental biology Earth-Surface Processes Sedimentary ancient DNA VDP::Matematikk og Naturvitenskap: 400::Geofag: 450::Stratigrafi og paleontologi: 461 Geokemi Ancient DNA Geochemistry Paleogenomics Metagenomics Paleoecology Metabarcoding Environmental science Sedimentary rock |
| Zdroj: | Quaternary, Vol. 4, No 1 (2021) P. 6 Quaternary Quaternary, 2021, 4 (1), pp.6. ⟨10.3390/quat4010006⟩ Quaternary, MDPI, 2021, ⟨10.3390/quat4010006⟩ Capo, E, Giguet-Covex, C, Rouillard, A, Nota, K, Heintzman, P D, Vuillemin, A, Ariztegui, D, Arnaud, F, Belle, S, Bertilsson, S, Bigler, C, Bindler, R, Brown, A G, Clarke, C L, Crump, S E, Debroas, D, Englund, G, Ficetola, G F, Garner, R E, Gauthier, J, Gregory-Eaves, I, Heinecke, L, Herzschuh, U, Ibrahim, A, Kisand, V, Kjær, K H, Lammers, Y, Littlefair, J, Messager, E, Monchamp, M-E, Olajos, F, Orsi, W, Pedersen, M W, Rijal, D P, Rydberg, J, Spanbauer, T, Stoof-Leichsenring, K R, Taberlet, P, Talas, L, Thomas, C, Walsh, D A, Wang, Y, Willerslev, E, van Woerkom, A, Zimmermann, H H, Coolen, M J L, Epp, L S, Domaizon, I, Alsos, I G & Parducci, L 2021, ' Lake Sedimentary DNA Research on Past Terrestrial and Aquatic Biodiversity : Overview and Recommendations ', Quaternary, vol. 4, no. 1, 6 . https://doi.org/10.3390/quat4010006 Quaternary, MDPI, 2021, 4 (1), pp.6. ⟨10.3390/quat4010006⟩ Quaternary, Vol 4, Iss 6, p 6 (2021) EPIC3Quaternary, 4(1), pp. 6, ISSN: 2571-550X |
| ISSN: | 2571-550X |
| DOI: | 10.3390/quat4010006⟩ |
| Popis: | International audience; The use of lake sedimentary DNA to track the long-term changes in both terrestrial and aquatic biota is a rapidly advancing field in paleoecological research. Although largely applied nowadays, knowledge gaps remain in this field and there is therefore still research to be conducted to ensure the reliability of the sedimentary DNA signal. Building on the most recent literature and seven original case studies, we synthesize the state-of-the-art analytical procedures for effective sampling, extraction, amplification, quantification and/or generation of DNA inventories from sedimentary ancient DNA (sedaDNA) via high-throughput sequencing technologies. We provide recommendations based on current knowledge and best practises. |
| Databáze: | OpenAIRE |
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