Enzyme localization can drastically affect signal amplification in signal transduction pathways
| Autor: | Siebe B. van Albada, Pieter Rein ten Wolde |
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| Rok vydání: | 2007 |
| Předmět: |
Cytoplasm
Eukaryotes Systems biology Molecular Networks (q-bio.MN) Phosphatase Cell Biophysics Biology Models Biological Cell Physiological Phenomena Cellular and Molecular Neuroscience medicine Genetics Animals Quantitative Biology - Molecular Networks Prokaryotes lcsh:QH301-705.5 Molecular Biology Ecology Evolution Behavior and Systematics chemistry.chemical_classification Models Statistical Ecology Systems Biology Computational Biology Chemotaxis Models Theoretical Enzymes Cell biology Kinetics Enzyme medicine.anatomical_structure lcsh:Biology (General) chemistry Computational Theory and Mathematics Modeling and Simulation FOS: Biological sciences Ultrasensitivity Signal transduction Research Article Signal Transduction |
| Zdroj: | PLoS Computational Biology PLoS Computational Biology, Vol 3, Iss 10, Pp 1925-1934 (2007) |
| DOI: | 10.48550/arxiv.0708.3599 |
| Popis: | Push–pull networks are ubiquitous in signal transduction pathways in both prokaryotic and eukaryotic cells. They allow cells to strongly amplify signals via the mechanism of zero-order ultrasensitivity. In a push–pull network, two antagonistic enzymes control the activity of a protein by covalent modification. These enzymes are often uniformly distributed in the cytoplasm. They can, however, also be colocalized in space; for instance, near the pole of the cell. Moreover, it is increasingly recognized that these enzymes can also be spatially separated, leading to gradients of the active form of the messenger protein. Here, we investigate the consequences of the spatial distributions of the enzymes for the amplification properties of push–pull networks. Our calculations reveal that enzyme localization by itself can have a dramatic effect on the gain. The gain is maximized when the two enzymes are either uniformly distributed or colocalized in one region in the cell. Depending on the diffusion constants, however, the sharpness of the response can be strongly reduced when the enzymes are spatially separated. We discuss how our predictions could be tested experimentally. Author Summary Living cells continually have to respond to a changing environment. To this end, they do not only have to detect environmental signals, but also to amplify them. In living cells, signals are often amplified in so-called push-pull networks. In a push–pull network, two enzymes control the activity of a protein in an antagonistic manner. A well-known example is a network in which a kinase phosphorylates a messenger protein, while a phosphatase dephosphorylates the same protein. While it has long been assumed that the enzymes are uniformly distributed in the cytoplasm, it is increasingly becoming clear that in many systems one or both of the enzymes are localized in space, for instance near the cell pole. If the enzymes are spatially separated, then spatial gradients of the messenger protein can form, and recently a number of these protein gradients have been observed experimentally. We study by numerical calculations how the amplification properties of push–pull networks depend upon the spatial distribution of the enzymes. We find that the gain is maximized when the enzymes are either uniformly distributed or colocalized in space. Depending upon the diffusion constants, however, the sharpness of the response can be strongly reduced when the enzymes are spatially separated. |
| Databáze: | OpenAIRE |
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