Pan-genomic analysis reveals that the evolution of Dietzia species depends on their living habitats
| Autor: | Yong Nie, Xiao-Lei Wu, Hui Fang, Jin-Bo Xu |
|---|---|
| Rok vydání: | 2020 |
| Předmět: |
0303 health sciences
Phylogenetic tree Gene Transfer Horizontal 030306 microbiology Genomics Biology Microbiology Genome Actinobacteria Evolution Molecular 03 medical and health sciences Habitat Bacterial Proteins Evolutionary biology Gene duplication Horizontal gene transfer Gene family Clade Gene Ecology Evolution Behavior and Systematics Ecosystem Genome Bacterial Phylogeny 030304 developmental biology |
| Zdroj: | Environmental microbiologyReferences. 23(2) |
| ISSN: | 1462-2920 |
| Popis: | The bacterial genus Dietzia is widely distributed in various environments. The genomes of 26 diverse strains of Dietzia, including almost all the type strains, were analysed in this study. This analysis revealed a lipid metabolism gene richness, which could explain the ability of Dietzia to live in oil related environments. The pan-genome consists of 83,976 genes assigned into 10,327 gene families, 792 of which are shared by all the genomes of Dietzia. Mathematical extrapolation of the data suggests that the Dietzia pan-genome is open. Both gene duplication and gene loss contributed to the open pan-genome, while horizontal gene transfer was limited. Dietzia strains primarily gained their diverse metabolic capacity through more ancient gene duplications. Phylogenetic analysis of Dietzia isolated from aquatic and terrestrial environments showed two distinct clades from the same ancestor. The genome sizes of Dietzia strains from aquatic environments were significantly larger than those from terrestrial environments, which was mainly due to the occurrence of more gene loss events during the evolutionary progress of the strains from terrestrial environments. The evolutionary history of Dietzia was tightly coupled to environmental conditions, and iron concentrations should be one of the key factors shaping the genomes of the Dietzia lineages. |
| Databáze: | OpenAIRE |
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