COD::CIF::Parser: an error-correcting CIF parser for the Perl language
| Autor: | Andrius Merkys, Justas Butkus, Mykolas Okulič-Kazarinas, Saulius Gražulis, Antanas Vaitkus, Visvaldas Kairys |
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| Rok vydání: | 2016 |
| Předmět: |
Computer science
Data validation 02 engineering and technology 010402 general chemistry computer.software_genre 01 natural sciences General Biochemistry Genetics and Molecular Biology CIF parsers Perl Crystallography Open Database Hardware_INTEGRATEDCIRCUITS CIF applications computer.programming_language Parsing Programming language Python (programming language) 021001 nanoscience & nanotechnology 0104 chemical sciences TheoryofComputation_MATHEMATICALLOGICANDFORMALLANGUAGES Error correcting 0210 nano-technology computer Hardware_LOGICDESIGN |
| Zdroj: | Journal of Applied Crystallography, Hoboken : Wiley-Blackwell Publishing Ltd, 2016, Vol. 49, Part 1, p. 292-301 Journal of Applied Crystallography |
| ISSN: | 1600-5767 0021-8898 |
| Popis: | A syntax-correcting CIF parser, COD::CIF::Parser, is described that can parse CIF 1.1 files and accurately report the position and nature of the discovered syntactic problems while automatically correcting the most common and the most obvious syntactic deficiencies. A syntax-correcting CIF parser, COD::CIF::Parser, is presented that can parse CIF 1.1 files and accurately report the position and the nature of the discovered syntactic problems. In addition, the parser is able to automatically fix the most common and the most obvious syntactic deficiencies of the input files. Bindings for Perl, C and Python programming environments are available. Based on COD::CIF::Parser, the cod-tools package for manipulating the CIFs in the Crystallography Open Database (COD) has been developed. The cod-tools package has been successfully used for continuous updates of the data in the automated COD data deposition pipeline, and to check the validity of COD data against the IUCr data validation guidelines. The performance, capabilities and applications of different parsers are compared. |
| Databáze: | OpenAIRE |
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