Complete plastid genome sequence of goosegrass (Eleusine indica) and comparison with other Poaceae
| Autor: | J. Scott McElroy, Hui Zhang, Elijah K. Lowe, Leslie R. Goertzen, Nathan D. Hall |
|---|---|
| Rok vydání: | 2017 |
| Předmět: |
0106 biological sciences
0301 basic medicine DNA Plant Inverted repeat Eleusine indica Sequence assembly Eleusine Poaceae 01 natural sciences DNA sequencing Evolution Molecular 03 medical and health sciences Species Specificity Genetics Genome Chloroplast Conserved Sequence Phylogeny Illumina dye sequencing Whole genome sequencing biology DNA Chloroplast General Medicine biology.organism_classification 030104 developmental biology Genome Plant GC-content Microsatellite Repeats 010606 plant biology & botany |
| Zdroj: | Gene. 600:36-43 |
| ISSN: | 0378-1119 |
| Popis: | Eleusine indica , also known as goosegrass, is a serious weed in at least 42 countries. In this paper we report the complete plastid genome sequence of goosegrass obtained by de novo assembly of paired-end and mate-paired reads generated by Illumina sequencing of total genomic DNA. The goosegrass plastome is a circular molecule of 135,151 bp in length, consisting of two single-copy regions separated by a pair of inverted repeats (IRs) of 20,919 bases. The large (LSC) and the small (SSC) single-copy regions span 80,667 bases and 12,646 bases, respectively. The plastome of goosegrass has 38.19% GC content and includes 108 unique genes, of which 76 are protein-coding, 28 are transfer RNA, and 4 are ribosomal RNA. The goosegrass plastome sequence was compared to eight other species of Poaceae. Although generally conserved with respect to Poaceae, this genomic resource will be useful for evolutionary studies within this weed species and the genus Eleusine . |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|
Full Text from ScienceDirect