The value of updating GenBank accessions for supermatrix phylogeny: The case of the New Guinean marsupial carnivore genus Myoictis
| Autor: | Manuela Cascini, Matthew J. Phillips, Michael Westerman |
|---|---|
| Rok vydání: | 2021 |
| Předmět: |
0106 biological sciences
010603 evolutionary biology 01 natural sciences 03 medical and health sciences Genus Phylogenetics Genetics Supermatrix Animals Carnivore Molecular Biology Ecology Evolution Behavior and Systematics Phylogeny 030304 developmental biology Marsupial Cell Nucleus 0303 health sciences New Guinea biology Myoictis Dasyuridae biology.organism_classification Marsupialia Evolutionary biology GenBank Databases Nucleic Acid |
| Zdroj: | Molecular phylogenetics and evolution. 166 |
| ISSN: | 1095-9513 |
| Popis: | Erroneous taxonomic attributions in GenBank accessions can mislead phylogenetic inference and appear to be widespread within genera. We investigate the influence of taxonomic misattributions for reconstructing the phylogeny of three-striped dasyures, which include four recognized Myoictis species (Marsupialia: Dasyuridae) that are distributed across New Guinea and nearby islands. Molecular phylogenetic studies that have focused on dasyurids consistently resolve the interrelationships of these small carnivores, grouping M. leucura with M. wavicus, and placing M. wallacei and M. melas as successively deeper divergences from these. Two recent marsupial and mammalian supermatrix phylogenies instead favour an alternative Myoictis topology that is discordant with each of these relationships. We add new nuclear and mitochondrial sequences and employ randomized accession resampling that shows the supermatrix topologies are an artefact of several outdated taxonomic attributions in GenBank. Updating these accessions brings agreement across Myoictis phylogenies with randomly resampled accessions. We encourage authors to update GenBank taxonomic attributions and we argue that an option is needed for flagging accessions that are not demonstrably incorrect, but that provide anomalous results. This would serve both as a caution for future supermatrix construction and to highlight accessions of potentially significant biological interest for further study. |
| Databáze: | OpenAIRE |
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