GiardiaDB and TrichDB: integrated genomic resources for the eukaryotic protist pathogens Giardia lamblia and Trichomonas vaginalis
| Autor: | Cristina Aurrecoechea, Frank Innamorato, David S. Roos, Alan R. Gingle, Jane M. Carlton, Christian J. Stoeckert, Charles Treatman, Gregory R. Grant, Cary Pennington, Deborah F. Pinney, Jessica C. Kissinger, Omar S. Harb, Haiming Wang, Steve Fischer, John Brestelli, Mark Heiges, Vishal Nayak, John Iodice, Chris Ross, Brian P. Brunk, Hilary G. Morrison, Bindu Gajria, John A. Miller, Eileen Kraemer, Jennifer Dommer, Xin Gao, Wei Li, Steven A. Sullivan |
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| Rok vydání: | 2009 |
| Předmět: |
Phylogenetic tree
InformationSystems_DATABASEMANAGEMENT Genomics Articles Computational biology Biology medicine.disease_cause Genome Microbiology Systems Integration Annotation ComputingMethodologies_PATTERNRECOGNITION Databases Genetic PlasmoDB Trichomonas vaginalis Genetics medicine Animals Giardia lamblia Genome Protozoan Gene Software |
| Zdroj: | Nucleic Acids Research |
| ISSN: | 1362-4962 0305-1048 |
| Popis: | GiardiaDB (http://GiardiaDB.org) and TrichDB (http://TrichDB.org) house the genome databases for Giardia lamblia and Trichomonas vaginalis, respectively, and represent the latest additions to the EuPathDB (http://EuPathDB.org) family of functional genomic databases. GiardiaDB and TrichDB employ the same framework as other EuPathDB sites (CryptoDB, PlasmoDB and ToxoDB), supporting fully integrated and searchable databases. Genomic-scale data available via these resources may be queried based on BLAST searches, annotation keywords and gene ID searches, GO terms, sequence motifs and other protein characteristics. Functional queries may also be formulated, based on transcript and protein expression data from a variety of platforms. Phylogenetic relationships may also be interrogated. The ability to combine the results from independent queries, and to store queries and query results for future use facilitates complex, genome-wide mining of functional genomic data. |
| Databáze: | OpenAIRE |
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