Genome-wide identification, and characterization of the CDPK gene family reveal their involvement in abiotic stress response in Fragaria x ananassa
| Autor: | I. L. Vighi, Cesar Valmor Rombaldi, Amilton Seixas, Luciano da Silva Pinto, Rosane Lopes Crizel, Vanessa Galli, Ellen Cristina Perin, Rafael Danelon dos Santos Woloski |
|---|---|
| Rok vydání: | 2020 |
| Předmět: |
0106 biological sciences
0301 basic medicine Molecular biology Science Biology Fragaria 01 natural sciences Interactome Genome Chromosomes Plant Gene Expression Regulation Enzymologic Article 03 medical and health sciences chemistry.chemical_compound Gene Expression Regulation Plant Stress Physiological Phylogenetics Genetics Gene family Calcium Signaling Protein Interaction Maps RNA-Seq Gene Abscisic acid Phylogeny Plant Proteins Abiotic component Multidisciplinary Abiotic stress food and beverages Chromosome Mapping Gene Expression Regulation Developmental 030104 developmental biology chemistry Multigene Family Medicine Plant sciences Protein Kinases Genome Plant Abscisic Acid 010606 plant biology & botany |
| Zdroj: | Scientific Reports Scientific Reports, Vol 10, Iss 1, Pp 1-17 (2020) |
| ISSN: | 2045-2322 |
| Popis: | Calcium-dependent protein kinases (CDPKs) are encoded by a large gene family and play important roles against biotic and abiotic stresses and in plant growth and development. To date, little is known about the CDPK genes in strawberry (Fragaria x ananassa). In this study, analysis of Fragaria x ananassa CDPK gene family was performed, including gene structures, phylogeny, interactome and expression profiles. Nine new CDPK genes in Fragaria x ananassa were identified based on RNA-seq data. These identified strawberry FaCDPK genes were classified into four main groups, based on the phylogenetic analysis and structural features. FaCDPK genes were differentially expressed during fruit development and ripening, as well as in response to abiotic stress (salt and drought), and hormone (abscisic acid) treatment. In addition, the interaction network analysis pointed out proteins involved in the ABA-dependent response to plant stress via Ca2+ signaling, especially RBOHs. To our knowledge, this is the first report on CDPK families in Fragaria x ananassa, and it will provide valuable information for development of biofortified fruits and stress tolerant plants. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|