| Autor: |
Zmienko, Agnieszka, Samelak-Czajka, Anna, Kozlowski, Piotr, Szymanska, Maja, Figlerowicz, Marek |
| Rok vydání: |
2016 |
| DOI: |
10.6084/m9.figshare.c.3602390_d2 |
| Popis: |
Figure S1. Distribution of DNA copy number in regions covered by CNV_610 and CNV_611 in 80 natural accessions of Arabidopsis (MPICao2010 set). Figure S2. A schematic map of Arabidopsis genes covered by AthMSH2-MLPA assay. Figure S3. Exemplar electropherograms of AthMSH2-MLPA assay results. Figure S4. Pairwise correlation of MLPA signals obtained with probes mlpaB-mlpaG in AthMSH2-MLPA genotyping assay of Arabidopsis populations. Figure S5. Nonhierarchical phylogenetic network of a subset of 154 accessions based on 20-kb regions flanking the CNVs and its relation to the genetic groups defined by 1001 Genomes Consortium. Figure S6. Linkage disequilibrium (LD) at genomic regions surrounding the investigated CNVs. Figure S7. Rate of missing calls at AT3G18530-AT3G18535 loci in pseudogenome sequences of 1135 Arabidopsis accessions. Figure S8. The sequence composition of the left and right breakpoints in accessions with “del-2” and “dupl-2” genotypes. Figure S9. Sequence alignment of CNV breakpoints in accessions with “del-2” genotype. Figure S10. Sequence alignment of CNV breakpoints in accessions with simple “dupl-2” genotype. Figure S11. Sequence alignment of CNV breakpoints in accessions with “dupl-2” genotype harboring extended duplication, that involves also the 3’ flank of the right LCR. Figure S12. Optimization of genomic DNA template input for ddPCR. Figure S13. Optimization of primer annealing temperatures for ddPCR. Table S2. Sequences of MLPA probes. Table S3. Gene specific primers used for ddPCR assays. (PDF 1563 kb) |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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