Additional file 1 of MAPK cascade gene family in Camellia sinensis: In-silico identification, expression profiles and regulatory network analysis

Autor: Archita Chatterjee, Abhirup Paul, G. Meher Unnati, Rajput, Ruchika, Biswas, Trisha, Tamalika Kar, Srijita Basak, Mishra, Neelam, Pandey, Ashutosh, Srivastava, Anurag Prakash
Rok vydání: 2020
DOI: 10.6084/m9.figshare.12926288.v1
Popis: Additional file 1: Table S1.. BLAST positives table for MKK genes of Camellia sinensis. Arabidopsis MKK sequences, retrieved from TAIR database, were used as queries to search against TPIA database to identify the putative tea MKK genes. Table S2. BLAST positives table for MPK genes of Camellia sinensis. Arabidopsis MPK sequences, retrieved from TAIR database, were used as queries to search against TPIA database to identify the putative tea MPK genes. Table S3. Subcellular localization of the 5 MKK proteins. BaCelLo web server was used to predict the localization. Here, the localization steps indicate where the gene is localized and expressed in the plant body. Table S4. Subcellular localizations of the 16 MPK proteins. BaCelLo web server was used to predict the localization. Here, the localization steps indicate where the gene is localized and expressed in the plant body. Table S5. The dS/dN ratio of MKK genes in C. sinensis. This ratio is calculated to comprehend the selection pressure. The SNAP server ( https://www.hiv.lanl.gov/content/sequence/SNAP/SNAP.html ) has been used to generate these values. Table S6. The dS/dN ratio of MPK genes in C. sinensis. This ratio is calculated to comprehend the selection pressure. The SNAP server ( https://www.hiv.lanl.gov/content/sequence/SNAP/SNAP.html ) has been used to generate these values.
Databáze: OpenAIRE