Supplemental Figures 1-15 from Induction of Thioredoxin-Interacting Protein by a Histone Deacetylase Inhibitor, Entinostat, Is Associated with DNA Damage and Apoptosis in Esophageal Adenocarcinoma

Autor: R. Taylor Ripley, David S. Schrump, Jonathan M. Hernandez, Chuong D. Hoang, Jeremy L. Davis, Leonard M. Neckers, Derek J. Nancarrow, David G. Beer, Laurence P. Diggs, Kaitlin C. McLoughlin, Sichuan Xi, Shaojian Gao, Min-Jung Lee, Sunmin Lee, Jane B. Trepel, Daniel R. Crooks, Emily S. Reardon, Vivek Shukla, Lucas A. McDuffie, Yuan Xu, Kate Brown, Deborah R. Surman, Paul L. Feingold
Rok vydání: 2023
DOI: 10.1158/1535-7163.22505275
Popis: Supplemental Figure 1: Chromatin immunoprecipitation was performed to assess the histone modification marks, H3K27Me3, H3K9Ac2, H3K4Me3, and H3K79Me2 in Flo-1 and Esc2 after glutamine withdrawal; Supplemental Figure 2: qRT-PCR normalized to b-actin measured TXNIP mRNA expression after Flo-1, Esc2, OE33, and CP-C were treated for 72 hours with L-Glutamic acid γ-(p-nitroanilide) hydrochloride (GPNA) and grown in 96-well plates; Supplemental Figure 3: Realtime Seahorse extracellular flux analysis of extracellular acidification rate (ECAR) measures glycolytic activity based on sequential glucose, oligomycin (oligo), and 2-DG injections at the time points indicated; Supplemental Figure 4: YSI analyzer measured glucose uptake over a 5-day period in Flo-1 and Esc2 with overexpression of TXNIP; Supplemental Figure 5: qRT-PCR normalized to b-actin measured mRNA levels of GLUT1, GLUT4, HK2, and LDH-A in Flo-1 and Esc2 overexpressing TXNIP versus controls; Supplemental Figure 6: Oxidative consumption ratio (OCR) measured mitochondrial function with sequential injections of oligomycin (oligo), FCCP, and rotenone/antimycin a (R/A) at the time points indicated in Flo-1, Esc2, and OE33 overexpressing TXNIP versus controls; Supplemental Figure 7: Oxidative consumption ratio (OCR) measured mitochondrial function with sequential injections of oligomycin (oligo), FCCP, and rotenone/antimycin a (R/A) at the time points indicated in Esc2 cells with lentiviral shRNA knockdown of TXNIP; Supplemental Figure 8: Proliferation was measured using Cyquant DNA quantification kits over 5 days in Esc2 cells with lentiviral shRNA knockdown of TXNIP versus controls; Supplemental Figure 9: Esc2 cells overexpressing TXNIP versus controls were grown in 96-well plates with or without N-acetyl-cysteine (NAC); Supplemental Figure 10: Esc2 cells overexpressing TXNIP were grown in 96-well plates at normoxic conditions (20%) or hypoxic conditions (5%); Supplemental Figure 11: Colonies of Flo-1 overexpressing TXNIP versus controls were grown at normoxic conditions (20%) or hypoxic conditions (5%) in soft agar and were stained with crystal violet, photographed, and counted; Supplemental Figure 12: YSI analyzer measured lactate secretion at 24 and 48 hours in Flo-1 overexpressing TXNIP; Supplemental Figure 13: In Flo-1 and Esc2 cells treated with cisplatin, entinostat, or the combination, quantification of Annexin V apoptosis assay based on stage of apoptosis; Supplemental Figure 14: Representative pictures from Flow Cytometry results of Esc2 cells with lentiviral shRNA knockdown of TXNIP versus controls after treatment with cisplatin, entinostat, or the combination; Supplemental Figure 15: Chromatin immunoprecipitation was performed to assess the histone modification mark, H3K9Ac2, in Flo-1 after treatment with entinostat, cisplatin, or the combination of both.
Databáze: OpenAIRE