Erratum: Daphnia magna transcriptome by RNA-Seq across 12 environmental stressors
| Autor: | Omid Shams Solari, Christoph R. Haag, Adam Petrusek, Mieke Jansen, Luisa Orsini, Luc De Meester, Katina I. Spanier, John K. Colbourne, Michael E. Pfrender, Christian Laforsch, Tom J. Little, Jouni Kvist, Andrew P. Beckerman, Ellen Decaestecker, Douglas Rush, Donald L. Gilbert, Jana Asselman, Anurag Chaturvedi, Mikko J. Frilander, Ram Podicheti, James B. Brown, Dieter Ebert, Karel A.C. De Schamphelaere |
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| Přispěvatelé: | Institute of Biotechnology, Centre of Excellence in Metapopulation Research, Minor spliceosome |
| Rok vydání: | 2017 |
| Předmět: |
0301 basic medicine
Data Descriptor RNA-Seq Genome Daphnia Transcriptome Databases Genetic reproductive and urinary physiology Genetics biology 1184 Genetics developmental biology physiology RNA sequencing Corrigenda 6. Clean water Computer Science Applications ComputingMethodologies_DOCUMENTANDTEXTPROCESSING Statistics Probability and Uncertainty Biotechnology Information Systems Statistics and Probability InformationSystems_INFORMATIONSTORAGEANDRETRIEVAL education Daphnia magna ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION Library and Information Sciences GeneralLiterature_MISCELLANEOUS Education Databases 03 medical and health sciences Genetic Animals Gene Whole genome sequencing Base Sequence Prevention Human Genome fungi Biology and Life Sciences biology.organism_classification Computational biology and bioinformatics ComputingMethodologies_PATTERNRECOGNITION 030104 developmental biology Evolutionary biology Metagenomics RNA Gene-Environment Interaction |
| Zdroj: | SCIENTIFIC DATA Scientific Data Scientific data, vol 3, iss 1 Scientific data, vol 4, iss 1 |
| ISSN: | 2052-4463 |
| DOI: | 10.1038/sdata.2017.6 |
| Popis: | The full exploration of gene-environment interactions requires model organisms with well-characterized ecological interactions in their natural environment, manipulability in the laboratory and genomic tools. The waterflea Daphnia magna is an established ecological and toxicological model species, central to the food webs of freshwater lentic habitats and sentinel for water quality. Its tractability and cyclic parthenogenetic life-cycle are ideal to investigate links between genes and the environment. Capitalizing on this unique model system, the STRESSFLEA consortium generated a comprehensive RNA-Seq data set by exposing two inbred genotypes of D. magna and a recombinant cross of these genotypes to a range of environmental perturbations. Gene models were constructed from the transcriptome data and mapped onto the draft genome of D. magna using EvidentialGene. The transcriptome data generated here, together with the available draft genome sequence of D. magna and a high-density genetic map will be a key asset for future investigations in environmental genomics. |
| Databáze: | OpenAIRE |
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