Analyses of 202 plastid genomes elucidate the phylogeny of Solanum section Petota
| Autor: | Qiqi Liang, Binquan Huang, Holly Ruess, Christophe Colleoni, David M. Spooner |
|---|---|
| Přispěvatelé: | University of Oxford [Oxford], Yunnan Agricultural University, University of Wisconsin-Madison, Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 (UGSF), Université de Lille-Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS), University of Oxford, Université de Lille-Centre National de la Recherche Scientifique (CNRS), Université de Lille, CNRS, Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 [UGSF] |
| Jazyk: | angličtina |
| Rok vydání: | 2019 |
| Předmět: |
0301 basic medicine
Plant domestication Genome Plastid Introgression lcsh:Medicine Biology [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics Phylogenetics and taxonomy Solanum Genome Polymorphism Single Nucleotide DNA sequencing Article [SDV.GEN.GPL]Life Sciences [q-bio]/Genetics/Plants genetics 03 medical and health sciences 0302 clinical medicine Phylogenetics Genetic variation Plastid Clade lcsh:Science Phylogeny Multidisciplinary Phylogenetic tree lcsh:R fungi food and beverages Genetic Variation Diploidy 030104 developmental biology Evolutionary biology lcsh:Q 030217 neurology & neurosurgery |
| Zdroj: | Scientific Reports Scientific Reports, Nature Publishing Group, 2019, 9, pp.4454. ⟨10.1038/s41598-019-40790-5⟩ Scientific Reports, 2019, 9, pp.4454. ⟨10.1038/s41598-019-40790-5⟩ Scientific Reports, Vol 9, Iss 1, Pp 1-7 (2019) |
| ISSN: | 2045-2322 |
| DOI: | 10.1038/s41598-019-40790-5⟩ |
| Popis: | Our paper analyzes full plastid DNA sequence data of 202 wild and cultivated diploid potatoes, Solanum section Petota, to explore its phylogenetic utility compared to prior analyses of the same accessions using genome-wide nuclear SNPs, and plastid DNA restriction site data. The present plastid analysis discovered the same major clades as the nuclear data but with some substantial differences in topology within the clades. The considerably larger plastid and nuclear data sets add phylogenetic resolution within the prior plastid DNA restriction site data, highlight plastid/nuclear incongruence that supports hypotheses of hybridization/introgression to help explain the taxonomic difficulty in the section. |
| Databáze: | OpenAIRE |
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