Epilithonimonas ginsengisoli sp. nov., isolated from soil of a ginseng field
| Autor: | Ngoc-Lan Nguyen, Kyu-Hyon Hwang, Deok-Chun Yang, Yeon-Ju Kim, Shree Priya Ponnuraj, Van-An Hoang |
|---|---|
| Rok vydání: | 2015 |
| Předmět: |
DNA
Bacterial Spermidine Sequence analysis Molecular Sequence Data Panax Microbiology Phylogenetics RNA Ribosomal 16S Republic of Korea Botany Phylogeny Soil Microbiology Ecology Evolution Behavior and Systematics Base Composition Phylogenetic tree biology Strain (chemistry) Fatty Acids Vitamin K 2 Sequence Analysis DNA General Medicine Ribosomal RNA biology.organism_classification 16S ribosomal RNA Bacterial Typing Techniques Flavobacteriaceae Soil microbiology Bacteria |
| Zdroj: | International Journal of Systematic and Evolutionary Microbiology. 65:122-128 |
| ISSN: | 1466-5034 1466-5026 |
| DOI: | 10.1099/ijs.0.065466-0 |
| Popis: | A novel Gram-staining-negative, rod-shaped bacterium, designated DCY78T, was isolated from soil of a ginseng field in Yeon-cheon province (38° 04′ 00″ N 126° 57′ 00″ E), Republic of Korea. The phylogenetic analysis based on 16S rRNA gene sequences showed that strain DCY78T belonged to the genus Epilithonimonas and was most closely related to Epilithonimonas lactis DSM 19921T (98.5 % sequence similarity) and Epilithonimonas tenax DSM 16811T (97.8 %). Growth occurred at 10–30 °C with an optimum temperature of 28 °C. The pH range for growth was pH 5.5–8.0. The major polar lipids were found to be phosphatidylethanolamine three unidentified amino lipids and one unidentified polar lipid. The only predominant quinone was MK-6. The major polyamines were sym-homospermidine and spermidine. The major fatty acids were summed feature 3 (comprising C16 : 1ω6c and/or C16 : 1ω7c), iso-C15 : 0 and iso-C17 : 0 3-OH. The DNA G+C content was 37.9 mol%. On the basis of the phenotypic and genotypic analysis, the isolate is classified as representative of a novel species in the genus Epilithonimonas , for which the name Epilithonimonas ginsengisoli is proposed. The type strain is DCY78T ( = KCTC 32174T = JCM 19896T). |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|