| Autor: |
Berry, Alexander S. F., Pierdon, Meghann K., Misic, Ana M., Sullivan, Megan C., O’Brien, Kevin, Chen, Ying, Murray, Samuel J., Ramharack, Lydia A., Baldassano, Robert N., Parsons, Thomas D., Beiting, Daniel P. |
| Rok vydání: |
2021 |
| Předmět: |
|
| DOI: |
10.6084/m9.figshare.14863613 |
| Popis: |
Additional file 8: Supplemental Figure 8. There is no evidence that Escherichia coli in piglets were inherited from the maternal gut. A neighbor-joining phylogeny was reconstructed using 34 E. coli strains extracted from the shotgun metagenomic sequencing data from piglets and sows likely harboring only a single E. coli strain. Three sets of E. coli from different piglet-sow sets are highlighted in orange, cyan, and red. For example, highlighted in orange, the 3 piglets born to Sow 214 share similar E. coli genotypes, but immediately prior to birth (Day 114), the sow’s gut harbored a very different E. coli genotype. Similarly, in cyan, Sow 4074 and her piglet harbor different E. coli genotypes. Finally, in red, three piglets of Sow 1962 harbor E. coli genotypes with a most recent common ancestor at the root of the phylogeny. E. coli was chosen because it is the microbe found in the highest abundance across both sows and piglets, thus providing the deepest coverage of strains. |
| Databáze: |
OpenAIRE |
| Externí odkaz: |
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