Candidatus Frankia nodulisporulans sp. nov., an Alnus glutinosa-infective Frankia species unable to grow in pure culture and able to sporulate in-planta
| Autor: | Andreas Brachmann, Adrien C. Pozzi, Lorine Bethencourt, Philippe Normand, Natuschka M. Lee, Jörn Kalinowski, Pascale Fournier, Fede Berckx, Anita Sellstedt, Maria P. Fernandez, Jochen Blom, Katharina Pawlowski, Daniel Wibberg, Aude Herrera-Belaroussi, Danis Abrouk, Audrey Dubost |
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| Přispěvatelé: | Laboratoire d'Ecologie Microbienne - UMR 5557 (LEM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Ecole Nationale Vétérinaire de Lyon (ENVL)-VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE) |
| Rok vydání: | 2020 |
| Předmět: |
DNA
Bacterial Root nodule Hypha Frankia Sp plus Frankia strains Alnus Applied Microbiology and Biotechnology Microbiology 03 medical and health sciences RNA Ribosomal 16S Botany In-planta sporulation Frankia-Alnus symbiosis Ecology Evolution Behavior and Systematics Phylogeny 030304 developmental biology Sweden 0303 health sciences biology 030306 microbiology Sporangium Comparative genomics fungi Sequence Analysis DNA biology.organism_classification 16S ribosomal RNA Bacterial Typing Techniques Alnus glutinosa GenBank Candidatus France Root Nodules Plant Hydrogenasee [SDV.EE.IEO]Life Sciences [q-bio]/Ecology environment/Symbiosis |
| Zdroj: | Systematic and Applied Microbiology Systematic and Applied Microbiology, Elsevier, 2020, 43 (6), pp.126134. ⟨10.1016/j.syapm.2020.126134⟩ |
| ISSN: | 1618-0984 0000-0000 0723-2020 |
| Popis: | We describe a new Frankia species, for three non-isolated strains obtained from Alnus glutinosa in France and Sweden, respectively. These strains can nodulate several Alnus species (A. glutinosa, A. incana, A. alnobetula), they form hyphae, vesicles and sporangia in the root nodule cortex but have resisted all attempts at isolation in pure culture. Their genomes have been sequenced, they are significantly smaller than those of other Alnus-infective species (5Mb instead of 7.5Mb) and are very closely related to one another (ANI of 100%). The name Candidatus Frankia nodulisporulans is proposed. The GenBank/EMBL/DDBJ accession numbers for the 16S rRNA gene and draft genome sequences reported in this study for AgTrS, AgUmASt1 and AgUmASH1 are MT023539/LR778176/LR778180 and NZ_CADCWS000000000.1/CADDZU010000001/CADDZW010000001, respectively. Copyright © 2020 Elsevier GmbH. All rights reserved. |
| Databáze: | OpenAIRE |
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