The complete genome sequence of apple rootstock virus A, a novel nucleorhabdovirus identified in apple rootstocks
| Autor: | Su-Heon Lee, Jae Sun Moon, Ho-Jong Ju, Hyun-Ran Kim, Seungmo Lim, Dasom Baek |
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| Rok vydání: | 2019 |
| Předmět: |
food.ingredient
Nucleorhabdovirus Sequence analysis Hypothetical protein Genome Viral Biology Plant Roots Genome Open Reading Frames Viral Proteins 03 medical and health sciences food Sequence Homology Nucleic Acid Virology Gene Order Republic of Korea Gene Phylogeny 030304 developmental biology Genomic organization Genetics Whole genome sequencing 0303 health sciences 030306 microbiology Nucleic acid sequence Sequence Analysis DNA General Medicine Malus RNA Viral Rhabdoviridae |
| Zdroj: | Archives of Virology. 164:2641-2644 |
| ISSN: | 1432-8798 0304-8608 |
| DOI: | 10.1007/s00705-019-04348-0 |
| Popis: | We report the complete genome sequence of a novel nucleorhabdovirus, apple rootstock virus A (ApRVA), isolated from Malus spp. in South Korea. ApRVA has a 14,043-nt single-stranded negative-sense RNA genome. In the antigenome sense, it contains seven open reading frames, encoding the putative nucleocapsid protein, phosphoprotein, cell-to-cell movement protein, matrix protein, glycoprotein, RNA-dependent RNA polymerase, and an additional hypothetical protein, the gene for which is located between the genes for the matrix protein and glycoprotein. The complete genome sequence of ApRVA showed 47.45% nucleotide sequence identity to that of black currant-associated rhabdovirus 1. The genome organization, phylogenetic relationships, and sequence similarities to other nucleorhabdoviruses suggest that ApRVA is a new member of the genus Nucleorhabdovirus. |
| Databáze: | OpenAIRE |
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