The complete chloroplast genome of Pyrrosia bonii (Polypodiaceae), an important ornamental and medical fern
| Autor: | Ting Wang, Xiang Cai, Shanshan Liu, Shicheng Cai, Zhen Wang, Yingjuan Su, Shufeng Li |
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| Rok vydání: | 2018 |
| Předmět: |
0106 biological sciences
0301 basic medicine Whole genome sequencing Genetics ornamental and medical fern biology phylogenetic analysis Pyrrosia Pseudogene Pyrrosia bonii biology.organism_classification 010603 evolutionary biology 01 natural sciences Genome 03 medical and health sciences 030104 developmental biology Polypodiaceae Phylogenomics chloroplast genome Molecular Biology Genome size Mitogenome Announcement Illumina dye sequencing Research Article |
| Zdroj: | Mitochondrial DNA. Part B, Resources article-version (VoR) Version of Record |
| ISSN: | 2380-2359 |
| DOI: | 10.1080/23802359.2018.1491347 |
| Popis: | Pyrrosia bonii is an important ornamental and medical fern from Polypodiaceae. Its complete chloroplast genome sequence was characterized through de novo assembly with Illumina sequencing data. The genome size is 158,174 bp, with large single copy (LSC, 82,479 bp) and small single copy (SSC, 21,723 bp) regions separated by a pair of inverted repeats (IR, 26,986 bp). A total of 132 genes were identified, including 88 protein coding genes, 35 tRNA genes, eight rRNA genes, and one pseudogene. Maximum-likelihood phylogenetic tree revealed that P. bonii was most closely related to Lepisorus clathratus. The study will greatly facilitate the chloroplast phylogenomics of Polypodiaceae. |
| Databáze: | OpenAIRE |
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