Dataset for distribution of SIDER2 elements in the Leishmania major genome and transcriptome
| Autor: | Alberto Rastrojo, M. Carmen Thomas, Esther Garde, Manuel Carlos López, Begoña Aguado, Jose M. Requena |
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| Přispěvatelé: | Fundación Ramón Areces, Instituto de Salud Carlos III, Ministerio de Economía y Competitividad (España) |
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: |
0301 basic medicine
Genetics Leishmania Multidisciplinary Retrotransposon Repeated sequences Computational biology Biology biology.organism_classification lcsh:Computer applications to medicine. Medical informatics Genome Transcriptomes Transcriptome 03 medical and health sciences 030104 developmental biology lcsh:R858-859.7 Identification (biology) Leishmania major Research article lcsh:Science (General) Nomenclature SIDER2 Data Article lcsh:Q1-390 |
| Zdroj: | Data in Brief, Vol 11, Iss C, Pp 39-43 (2017) Digital.CSIC. Repositorio Institucional del CSIC instname Data in Brief |
| ISSN: | 2352-3409 |
| Popis: | This paper contains data related to the research article entitled “Genomic cartography and proposal of nomenclature for the repeated, interspersed elements of the Leishmania major SIDER2 family and identification of SIDER2-containing transcripts” [1]. SIDER2 elements are repeated sequences, derived from, nowadays, extinct retrotransposons, that populate the genomes of protist of the genera Leishmania. This dataset (Supplementary file 1), an inventory of 1100 SIDER2 elements, was generated by surveying the L. major complete genome using bioinformatics tools with further manual refinements. In addition to the genomic distribution of these elements (summarized in Fig. 1), this dataset contains information regarding their association with specific transcripts, based on the recently established transcriptome for L. major [2]. Ministerio de Economía y Competitividad (SAF2013-47556-R, co-financed with FEDER funds), and the Fondo de Investigaciones Sanitarias (ISCIII-RETIC RD12/0018/0009-FEDER).An institutional grant from the Fundación Ramón Areces |
| Databáze: | OpenAIRE |
| Externí odkaz: |
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