PolyQ: a database describing the sequence and domain context of polyglutamine repeats in proteins
| Autor: | Stephen P. Bottomley, Mark A. Bate, Amy L. Robertson, Ashley M. Buckle, Steve Androulakis |
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| Rok vydání: | 2010 |
| Předmět: |
chemistry.chemical_classification
Repetitive Sequences Amino Acid Architecture domain Database Sequence analysis Proteins Context (language use) Articles Neuronal toxicity Biology computer.software_genre Amino acid Domain (software engineering) Protein Structure Tertiary Protein structure chemistry Sequence Analysis Protein Genetics Humans Disease Databases Protein Peptides computer Sequence (medicine) |
| Zdroj: | Nucleic Acids Research |
| ISSN: | 1362-4962 |
| Popis: | The polyglutamine diseases are caused in part by a gain-of-function mechanism of neuronal toxicity involving protein conformational changes that result in the formation and deposition of β-sheet rich aggregates. Recent evidence suggests that the misfolding mechanism is context-dependent, and that properties of the host protein, including the domain architecture and location of the repeat tract, can modulate aggregation. In order to allow the bioinformatic investigation of the context of polyglutamines, we have constructed a database, PolyQ (http://pxgrid.med.monash.edu.au/polyq). We have collected the sequences of all human proteins containing runs of seven or more glutamine residues and annotated their sequences with domain information. PolyQ can be interrogated such that the sequence context of polyglutamine repeats in disease and non-disease associated proteins can be investigated. |
| Databáze: | OpenAIRE |
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