Supplementary Data 1 from Investigation of Antigen-Specific T-Cell Receptor Clusters in Human Cancers

Autor: Bo Li, Yang-Xin Fu, Catherine J. Wu, Hao Chen, Xiaowei Zhan, Jian Qiao, Sachet Shukla, Jianfeng Ye, Jiahui Chen, Jian Zhang, Longchao Liu, Hongyi Zhang
Rok vydání: 2023
Popis: Datasets generated in this study including: Supplementary file -15_antigens. Information for the 15 selected antigens for methodology performance evaluation. Supplementary file -TCRcount_correlation. Summary of association analysis between gene expression levels and clustered CDR3 count in each individual. Supplementary file -New_Group_genes. Summary of differential gene expression analysis between the single cells from new defined group and others, with fold change and FDR estimations. Supplementary file -Trm2vsTrm1_DETable. The differential expressed genes of Trm2vsTrm1. Supplementary file -CDR3_Cluster_Gene_Correlation: Summary of differential gene expression analysis between each CDR3 cluster and other TCGA tumors, with fold change and FDR estimations. Supplementary file -TCGAtcrClustered_iSMART. 4.6K iSMART clustered TCRs from TCGA tumor RNA-seq data.
Databáze: OpenAIRE