Complete genome sequences of hepatitis C virus subtype 3i and 3a subtype isolates from India
| Autor: | Vidya A. Arankalle, Anupriya S. Kulkarni, Gouri M. Gupte, Ashwini Y. Ramdasi |
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| Rok vydání: | 2010 |
| Předmět: |
medicine.medical_specialty
Genes Viral Genotype Hepatitis C virus Molecular Sequence Data Interferon therapy HCV genotypes India Genome Viral Hepacivirus medicine.disease_cause Genome Sequence Homology Nucleic Acid Internal medicine Humans Medicine Phylogeny Genetics Base Sequence Phylogenetic tree Reverse Transcriptase Polymerase Chain Reaction business.industry Gastroenterology Genetic Variation Sequence Analysis DNA Hepatitis C Chronic Hepatology Serum samples Virology RNA Viral business |
| Zdroj: | Indian Journal of Gastroenterology. 29:101-105 |
| ISSN: | 0975-0711 0254-8860 |
| Popis: | Hepatitis C virus (HCV), a major causative agent of chronic hepatitis, is classified into six major genotypes. Genotype 3 HCV infection is more sensitive to interferon therapy. In India, genotype 3, particularly subtype 3a, HCV infections are common. Three novel HCV subtypes i.e., 3g, 3j, and 3i were identified from India based on partial genomic sequences. This report provides full genome sequences of one isolate each of subtypes 3i and 3a. Serum samples positive for subtype 3i and 3a HCV RNA based on core region genomic sequences were studied. Complete HCV genomes were amplified as 11 overlapping PCR fragments and sequenced. The complete genomic sequence of Indian HCV 3i isolate clustered with other genotype 3 sequences, and was closer to subtypes 3b and 3a (80.5% and 79.1% [SD 0.4%] nucleotide identity). Nucleotide similarities were the highest in the core region (86.1–88.7%), and the least in the E2 region (69.4–70.7%). Phylogenetic tree analysis confirmed the existence of a separate subtype 3i. The Indian HCV 3a isolate’s complete genomic sequences clustered with previously known genotype 3a sequences with a nucleotide similarity of 91.1% (SD 0.2%). Neither isolates showed evidence of recombination of different HCV genotypes. The information on complete genomic sequences of the genotype 3 HCV isolates should be helpful in future studies on HCV evolution and classification, and for development of newer therapeutic and preventive strategies against this infection. |
| Databáze: | OpenAIRE |
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