Minimal Coarse-Grained Modelling Towards Implicit-Solvent Simulation of Generic Bolaamphiphiles
| Autor: | Jayashree Saha, Somajit Dey |
|---|---|
| Rok vydání: | 2019 |
| Předmět: |
Materials science
010304 chemical physics Dimer FOS: Physical sciences Condensed Matter - Soft Condensed Matter Computational Physics (physics.comp-ph) 010402 general chemistry 01 natural sciences 0104 chemical sciences Surfaces Coatings and Films Solvent chemistry.chemical_compound chemistry Chemical physics 0103 physical sciences Amphiphile Materials Chemistry Soft Condensed Matter (cond-mat.soft) Physical and Theoretical Chemistry Coarse-grained modeling Physics - Computational Physics |
| DOI: | 10.48550/arxiv.1909.06330 |
| Popis: | A simple, dual-site model of bolaamphiphiles (bolaforms or bipolar amphiphiles) is developed based on an earlier single-site model of (monopolar) amphiphiles [S. Dey, J. Saha, Phys. Rev. E 95, 023315 (2017)]. The model incorporates aqueous environment (both hydrophobic effect and hydration force) in its anisotropic site-site interactions, thus obviating the need to simulate solvent particles explicitly. This economy of sites and the absence of explicit solvent particles enable molecular dynamics simulations of bolaamphiphiles to achieve mesoscopic length and time-scales unattainable by any bead-spring model or explicit solvent computations. The model applies to generic bolas only, since the gain in scale can only be obtained by sacrificing the resolution of detailed molecular structure. Thanks to dual-sites, however, (as opposed to a single-site model) our model can incorporate the essential flexibility of bolas that leads to their U-conformers. The model bolas show successful self-assembly into experimentally observed nano-structures like micelles, rods, lamellae etc. and retain fluidity in very stable monolayers. Presence of membrane-spanning model bolas in bilayers of model monopolar amphiphiles increases the stability and impermeability of the lamellar phase. Model bolas are also seen to be less diffusive and to produce thicker layers compared to their monopolar counterparts. Rigid model bolas, though achiral themselves, show self-assembly into helical rods. As all these observations agree with the well-known key characteristics of archaeal lipids and synthetic bolaamphiphiles, our model promises to be effective for studies of bolas in context of biomimetics, drug-delivery and low molecular weight hydrogelators. To the best of our knowledge, no other single or dual-site, solvent-free model for bolas has been reported thus far. Comment: 9 pages, 9 figures |
| Databáze: | OpenAIRE |
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