Crucial motifs and residues in the extracellular loops influence the formation and specificity of connexin docking
| Autor: | Hiroshi Aoyama, Benny Yue, Donglin Bai |
|---|---|
| Rok vydání: | 2018 |
| Předmět: |
0301 basic medicine
Sequence analysis Amino Acid Motifs Protein domain Biophysics Connexin Sequence alignment Computational biology Biology Bioinformatics Biochemistry Molecular Docking Simulation Connexins Connexon 03 medical and health sciences 0302 clinical medicine Protein Domains otorhinolaryngologic diseases Animals Humans Gene Cell Biology Connexin 26 030104 developmental biology Docking (molecular) Mutation sense organs 030217 neurology & neurosurgery |
| Zdroj: | Biochimica et Biophysica Acta (BBA) - Biomembranes. 1860:9-21 |
| ISSN: | 0005-2736 |
| DOI: | 10.1016/j.bbamem.2017.07.003 |
| Popis: | Most of the early studies on gap junction (GJ) channel function and docking compatibility were on rodent connexins, while recent research on GJ channels gradually shifted from rodent to human connexins largely due to the fact that mutations in many human connexin genes are found to associate with inherited human diseases. The studies on human connexins have revealed some key differences from those found in rodents, calling for a comprehensive characterization of human GJ channels. Functional studies revealed that docking and formation of functional GJ channels between two hemichannels are possible only between docking-compatible connexins. Two groups of docking-compatible rodent connexins have been identified. Compatibility is believed to be due to their amino acid residue differences at the extracellular loop domains (E1 and E2). Sequence alignment of the E1 and E2 domains of all connexins known to make GJs revealed that they are highly conserved and show high sequence identity with human Cx26, which is the only connexin with near atomic resolution GJ structure. We hypothesize that different connexins have a similar structure as that of Cx26 at the E1 and E2 domains and use the corresponding residues in their E1 and E2 domains for docking. Based on the Cx26 GJ structure and sequence analysis of well-studied connexins, we propose that the E1-E1 docking interactions are staggered with each E1 interacting with two E1s on the docked connexon. The putative E1 docking residues are conserved in both docking-compatible and -incompatible connexins, indicating that E1 does not likely serve a role in docking compatibility. However, in the case of E2-E2 docking interactions, the putative docking residues are only conserved within the docking-compatible connexins, suggesting the E2 is likely to serve the function of docking compatibility. Docking compatibility studies on human connexins have attracted a lot of attention due to the fact that putative docking residues are mutational hotspots for several connexin-linked human diseases. This article is part of a Special Issue entitled: Gap Junction Proteins edited by Jean Claude Herve. |
| Databáze: | OpenAIRE |
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