ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud

Autor: Johannes Seiffarth, Tim Scherr, Bastian Wollenhaupt, Oliver Neumann, Hanno Scharr, Dietrich Kohlheyer, Ralf Mikut, Katharina Nöh
Rok vydání: 2022
Zdroj: bioRxiv 4 pp. (2022). doi:10.1101/2022.08.01.502297
DOI: 10.1101/2022.08.01.502297
Popis: SummaryReliable deep learning segmentation for microfluidic live-cell imaging requires comprehensive ground truth data. ObiWan-Microbi is a microservice platform combining the strength of state-of-the-art technologies into a unique integrated workflow for data management and efficient ground truth generation for instance segmentation, empowering collaborative semi-automated image annotation in the cloud.Availability and ImplementationObiWan-Microbi is open-source and available under the MIT license at https://github.com/hip-satomi/ObiWan-Microbi, along documentation and usage examples.Contactk.noeh@fz-juelich.deSupplementary informationSupplementary data are available online.
Databáze: OpenAIRE