Single-cell spatial immune landscape of primary and metastatic brain tumours

Autor: Elham Karimi, Miranda W. Yu, Sarah M. Maritan, Lucas J. M. Perus, Morteza Rezanejad, Mark Sorin, Matthew Dankner, Parvaneh Fallah, Samuel Dore, Dongmei Zuo, Benoit Fiset, Daan J. Kloosterman, LeeAnn Ramsay, Yuhong Wei, Stephanie Lam, Roa Alsajjan, Ian R. Watson, Gloria R. Urgoiti, Morag Park, Dieta Brandsma, Donna L. Senger, Jennifer A. Chan, Leila Akkari, Kevin Petrecca, Marie-Christine Guiot, Peter M. Siegel, Daniela F. Quail, Logan A. Walsh
Rok vydání: 2022
Předmět:
DOI: 10.5281/zenodo.7383719
Popis: We updated our data set, please use thenew version(md5:ece00981be0f2616c1c0a57d10f3176e). All data supporting the findings of the publication "Single-cell spatial immune landscapeof primary and metastatic brain tumours", including masks of high-dimension tif images, single-cell segmentation, single-cell cell types, and patient data. The code used to produce the results of this study is available at https://github.com/walsh-quail-labs/IMC_Brain. Raw primary imaging data can be obtained from the authors directly upon reasonable request. Glioma channel index names: Channel Name Channel Index CD117 1 CD11c 2 CD14 3 CD163 4 CD16 5 CD20 6 CD31 7 CD3 8 CD4 9 CD68 10 CD8 11 CD94 12 DNA1 13 FoxP3 14 GFAP 15 HLA-DR 16 MPO 17 Olig2 18 P2PY12 19 Sox2 20 Sox9 21 BrM channel index names: Channel Name Channel Index CD117 1 CD11c 2 CD14 3 CD163 4 CD16 5 CD20 6 CD31 7 CD3 8 CD4 9 CD68 10 CD8a 11 CD94 12 DNA1 13 FoxP3 14 GFAP 15 HLA-DR 16 MPO 17 MeLanA 18 P2PY12 19 PMEL 20 PanCK 21
Databáze: OpenAIRE