Accelerated identification of proteins by mass spectrometry by employing covalent pre-gel staining with Uniblue A

Autor: Silvia Valdés-Rodríguez, Matthew T. Yasui, Robert Winkler, Marco A. Mata-Gómez, Armando Guerrero-Rangel
Jazyk: angličtina
Rok vydání: 2012
Předmět:
lcsh:Medicine
nucleophilicity
Anthraquinones
Tandem mass spectrometry
Proteomics
Biochemistry
protein database
Mass Spectrometry
Analytical Chemistry
uniblue A
covalent bond
Computational Chemistry
derivatization
Rosaniline Dyes
Amino Acids
lcsh:Science
Databases
Protein

GeneralLiterature_REFERENCE(e.g.
dictionaries
encyclopedias
glossaries)

Polyacrylamide gel electrophoresis
ComputingMilieux_MISCELLANEOUS
Gel electrophoresis
Multidisciplinary
accuracy
biology
Physics
Escherichia coli Proteins
Chemical Reactions
article
standard
methodology
staining
Reference Standards
peptide
unclassified drug
protein electrophoresis
Covalent bond
Electrophoresis
Polyacrylamide Gel

amino acid
Research Article
Biotechnology
anthraquinone derivative
gel
two dimensional gel electrophoresis
Molecular Sequence Data
Biophysics
ComputerApplications_COMPUTERSINOTHERSYSTEMS
Biology
fuchsine
Mass spectrometry
chemistry
Escherichia coli protein
protein modification
proteomics
process optimization
Chemical Biology
tandem mass spectrometry
Escherichia coli
liquid chromatography
sulfonic acid derivative
controlled study
Amino Acid Sequence
intermethod comparison
Two-dimensional gel electrophoresis
dye
Staining and Labeling
Organic Chemistry
lcsh:R
Computational Biology
Proteins
prediction
anazolene sodium
Staining
process development
7 INGENIERÍA Y TECNOLOGÍA
protein analysis
sensitivity and specificity
validation process
molecular genetics
chemical structure
lcsh:Q
Sulfonic Acids
protein
Peptides
metabolism
Gels
polyacrylamide gel electrophoresis
Chromatography
Liquid
Zdroj: PLoS ONE
PLoS ONE, Vol 7, Iss 2, p e31438 (2012)
Popis: Background: The identification of proteins by mass spectrometry is a standard method in biopharmaceutical quality control and biochemical research. Prior to identification by mass spectrometry, proteins are usually pre-separated by electrophoresis. However, current protein staining and de-staining protocols are tedious and time consuming, and therefore prolong the sample preparation time for mass spectrometry. Methodology and Principal Findings: We developed a 1-minute covalent pre-gel staining protocol for proteins, which does not require de-staining before the mass spectrometry analysis. We investigated the electrophoretic properties of derivatized proteins and peptides and studied their behavior in mass spectrometry. Further, we elucidated the preferred reaction of proteins with Uniblue A and demonstrate the integration of the peptide derivatization into typical informatics tools. Conclusions and Significance: The Uniblue A staining method drastically speeds up the sample preparation for the mass spectrometry based identification of proteins. The application of this chemo-proteomic strategy will be advantageous for routine quality control of proteins and for time-critical tasks in protein analysis. © 2012 Mata-Gómez et al.
Databáze: OpenAIRE