Late Quaternary dynamics of Arctic biota from ancient environmental genomics

Autor: Inger Greve Alsos, David Bravo Nogues, Adriana Alberti, Jialu Cao, Youri Lammers, Thorfinn Sand Korneliussen, Yubin Zhang, Alexandra Rouillard, Eske Willerslev, Antonio Fernandez-Guerra, John Inge Svendsen, Jeffrey T. Rasic, David W. Beilman, Patrick Wincker, Per Möller, Fernando Racimo, Christoph Dockter, Alexei Tikhonov, Marie Kristine Føreid Merkel, Anna Cherezova, Julie Esdale, Lasse Vinner, Daniel Money, Duane G. Froese, Bianca De Sanctis, Anthony Ruter, Hannah L. Owens, Hugh McColl, Richard Durbin, Galina Gusarova, David J. Meltzer, Neil R. Edwards, James Haile, Nicolaj K. Larsen, Yingchun Xing, Kurt H. Kjær, Jan Mangerud, Mary E. Edwards, Kristian K. Kjeldsen, Mikkel Winther Pedersen, Birgitte Skadhauge, Carsten Rahbek, Grigory Fedorov, Eric Coissac, Ludovic Orlando, Anders A. Bjørk, Y. L. Wang, Philip B. Holden, Ana Prohaska
Přispěvatelé: Wang, Yucheng [0000-0002-7838-226X], Pedersen, Mikkel Winther [0000-0002-7291-8887], Alsos, Inger Greve [0000-0002-8610-1085], Prohaska, Ana [0000-0001-5459-6186], Rouillard, Alexandra [0000-0001-5778-6620], Alberti, Adriana [0000-0003-3372-9423], Denoeud, France [0000-0001-8819-7634], Money, Daniel [0000-0001-5151-3648], McColl, Hugh [0000-0002-7568-4270], Cherezova, Anna A. [0000-0002-6199-8164], Haile, James [0000-0002-8521-8337], Orlando, Ludovic [0000-0003-3936-1850], Beilman, David W. [0000-0002-2625-6747], Dockter, Christoph [0000-0001-5923-3667], Kjeldsen, Kristian K. [0000-0002-8557-5131], Mangerud, Jan [0000-0003-4793-7557], Rasic, Jeffrey T. [0000-0002-3549-6590], Skadhauge, Birgitte [0000-0001-7317-4376], Wincker, Patrick [0000-0001-7562-3454], Zhang, Yubin [0000-0003-4920-3100], Froese, Duane G. [0000-0003-1032-5944], Holden, Philip B. [0000-0002-2369-0062], Edwards, Neil R. [0000-0001-6045-8804], Durbin, Richard [0000-0002-9130-1006], Meltzer, David J. [0000-0001-8084-9802], Willerslev, Eske [0000-0002-7081-6748], Apollo - University of Cambridge Repository, Globe Institute, Faculty of Health and Medical Sciences, University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU), Génomique métabolique (UMR 8030), Genoscope - Centre national de séquençage [Evry] (GENOSCOPE), Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Centre National de la Recherche Scientifique (CNRS)-Université d'Évry-Val-d'Essonne (UEVE), Cherezova, Anna A [0000-0002-6199-8164], Beilman, David W [0000-0002-2625-6747], Kjeldsen, Kristian K [0000-0002-8557-5131], Rasic, Jeffrey T [0000-0002-3549-6590], Froese, Duane G [0000-0003-1032-5944], Holden, Philip B [0000-0002-2369-0062], Edwards, Neil R [0000-0001-6045-8804], Meltzer, David J [0000-0001-8084-9802], Apollo-University Of Cambridge Repository, University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS)
Jazyk: angličtina
Rok vydání: 2021
Předmět:
Geologic Sediments
010504 meteorology & atmospheric sciences
Woolly mammoth
Rain
[SDV]Life Sciences [q-bio]
Greenland
Population Dynamics
Datasets as Topic
Permafrost
01 natural sciences
631/158/2463
631/158/2462
Mammoths
631/208/212/2142
Woolly rhinoceros
Megafauna
Databases
Genetic
38/23
History
Ancient
Phylogeny
0303 health sciences
education.field_of_study
Multidisciplinary
biology
Arctic Regions
Ecology
Climate-change ecology
631/208/514/2254
704/158/2165
article
Palaeoecology
Biota
Vegetation
Plants
Grassland
Mitochondria
Geography
[SDE]Environmental Sciences
Climate Change
Population
45/22
Extinction
Biological
03 medical and health sciences
Spatio-Temporal Analysis
VDP::Mathematics and natural science: 400::Zoology and botany: 480
Animals
Humans
Herbivory
14. Life underwater
DNA
Ancient
education
Perissodactyla
030304 developmental biology
0105 earth and related environmental sciences
Mammoth
15. Life on land
biology.organism_classification
DNA
Environmental
Siberia
Lakes
Haplotypes
Arctic
13. Climate action
Wetlands
Ecological networks
Next-generation sequencing
Metagenomics
VDP::Matematikk og Naturvitenskap: 400::Zoologiske og botaniske fag: 480
Zdroj: Nature
Nature, Nature Publishing Group, 2021, 598 (7882), pp.634-640. ⟨10.1038/s41586-021-04016-x⟩
Wang, Y, Pedersen, M W, Alsos, I G, De Sanctis, B, Racimo, F, Prohaska, A, Coissac, E, Owens, H L, Merkel, M K F, Fernandez-Guerra, A, Rouillard, A, Lammers, Y, Alberti, A, Denoeud, F, Money, D, Ruter, A H, McColl, H, Larsen, N K, Cherezova, A A, Edwards, M E, Fedorov, G B, Haile, J, Orlando, L, Vinner, L, Korneliussen, T S, Beilman, D W, Bjørk, A A, Cao, J, Dockter, C, Esdale, J, Gusarova, G, Kjeldsen, K K, Mangerud, J, Rasic, J T, Skadhauge, B, Svendsen, J I, Tikhonov, A, Wincker, P, Xing, Y, Zhang, Y, Froese, D G, Rahbek, C, Nogues, D B, Holden, P B, Edwards, N R, Durbin, R, Meltzer, D J, Kjær, K H, Möller, P & Willerslev, E 2021, ' Late Quaternary dynamics of Arctic biota from ancient environmental genomics ', Nature . https://doi.org/10.1038/s41586-021-04016-x
Nature, 2021, 598 (7882), pp.634-640. ⟨10.1038/s41586-021-04016-x⟩
ISSN: 2018-2155
0028-0836
1476-4679
1476-4687
DOI: 10.1038/s41586-021-04016-x⟩
Popis: Acknowledgements: Acknowledgements: We thank D. H. Mann for his detailed and constructive comments; and T. Ager, J. Austin, T. B. Brand, A. Cooper, S. Funder, M. T. P. Gilbert, T. Jørgensen, N. J. Korsgaard, S. Liu, M. Meldgaard, P. V. S. Olsen, M. L. Siggaard-Andersen, J. Stenderup, S. A. Woodroffe and staff at the GeoGenetics Sequencing Core and National Park Service-Western Arctic National Parklands for help and support. E.W. and D.J.M. thank the staff at St. John’s College, Cambridge, for providing a stimulating environment for scientific discussion of the project. E.W. thanks Illumina for collaboration. The Lundbeck Foundation GeoGenetics Centre is supported by the Carlsberg Foundation (CF18-0024), the Lundbeck Foundation (R302-2018-2155), the Novo Nordisk Foundation (NNF18SA0035006), the Wellcome Trust (UNS69906) and GRF EXC CRS Chair (44113220)—Cluster of Excellence. The PhyloNorway plant genome database is part of the Norwegian Barcode of Life Network (https://www.norbol.org) funded by the Research Council of Norway (226134/F50), the Norwegian Biodiversity Information Centre (14-14, 70184209) and The Arctic University Museum of Norway. Metabarcoding sequencing was funded by the Central Public-Interest Scientific Institution Basal Research Fund, CAFS (2017B001 and 2020A001). B.D.S. is supported by the Wellcome Trust programme in Mathematical Genomics and Medicine (WT220023); F.R. by a Villum Fonden Young Investigator award (no. 00025300); D.J.M. by the Quest Archaeological Research Fund; P.M. by the Swedish Research Council (VR); R.D. by the Wellcome Trust (WT207492); and A.R. by a Marie Skłodowska-Curie Actions Individual Fellowship (MSCA-IF, 703542) and the Research Council of Norway (KLIMAFORSK, 294929). L.O. has received funding from the European Research Council (ERC) under the European Union’s Horizon 2020 research and innovation programme (no. 681605); I.G.A. and Y.L. from the ERC under the European Union’s Horizon 2020 research and innovation programme (no. 819192). J.I.S. and J.M. are supported by the Research Council of Norway. P.B.H. and N.R.E. acknowledge NERC funding (grant NE/P015093/1). D.W.B. was supported by a Marie Skłodowska-Curie Actions Incoming International Fellowship (MCIIF-40974). T.S.K. is funded by a Carlsberg Foundation Young Researcher Fellowship (CF19-0712).
During the last glacial-interglacial cycle, Arctic biotas experienced substantial climatic changes, yet the nature, extent and rate of their responses are not fully understood1-8. Here we report a large-scale environmental DNA metagenomic study of ancient plant and mammal communities, analysing 535 permafrost and lake sediment samples from across the Arctic spanning the past 50,000 years. Furthermore, we present 1,541 contemporary plant genome assemblies that were generated as reference sequences. Our study provides several insights into the long-term dynamics of the Arctic biota at the circumpolar and regional scales. Our key findings include: (1) a relatively homogeneous steppe-tundra flora dominated the Arctic during the Last Glacial Maximum, followed by regional divergence of vegetation during the Holocene epoch; (2) certain grazing animals consistently co-occurred in space and time; (3) humans appear to have been a minor factor in driving animal distributions; (4) higher effective precipitation, as well as an increase in the proportion of wetland plants, show negative effects on animal diversity; (5) the persistence of the steppe-tundra vegetation in northern Siberia enabled the late survival of several now-extinct megafauna species, including the woolly mammoth until 3.9 ± 0.2 thousand years ago (ka) and the woolly rhinoceros until 9.8 ± 0.2 ka; and (6) phylogenetic analysis of mammoth environmental DNA reveals a previously unsampled mitochondrial lineage. Our findings highlight the power of ancient environmental metagenomics analyses to advance understanding of population histories and long-term ecological dynamics.
Databáze: OpenAIRE
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