ViPTree: the viral proteomic tree server
| Autor: | Yosuke Nishimura, Hideya Uehara, Takashi Yoshida, Hiroyuki Ogata, Megumi Kuronishi, Susumu Goto |
|---|---|
| Jazyk: | angličtina |
| Rok vydání: | 2017 |
| Předmět: |
Proteomics
0301 basic medicine Statistics and Probability Web server Computer science viruses education Genomics Genome Viral Computational biology computer.software_genre Genome Biochemistry Computational and Statistical Genetics Viral Proteins 03 medical and health sciences Gene Molecular Biology Virus classification Molecular Sequence Annotation Computer Science Applications Tree (data structure) Computational Mathematics 030104 developmental biology Computational Theory and Mathematics Metagenomics Viruses Metagenome computer Software |
| Zdroj: | Bioinformatics. 33(15):2379-2380 |
| ISSN: | 1367-4803 |
| Popis: | Summary ViPTree is a web server provided through GenomeNet to generate viral proteomic trees for classification of viruses based on genome-wide similarities. Users can upload viral genomes sequenced either by genomics or metagenomics. ViPTree generates proteomic trees for the uploaded genomes together with flexibly selected reference viral genomes. ViPTree also serves as a platform to visually investigate genomic alignments and automatically annotated gene functions for the uploaded viral genomes, thus providing virus researchers the first choice for classifying and understanding newly sequenced viral genomes. Availability and implementation ViPTree is freely available at: http://www.genome.jp/viptree . Contact goto@kuicr.kyoto-u.ac.jp. Supplementary information Supplementary data are available at Bioinformatics online. |
| Databáze: | OpenAIRE |
| Externí odkaz: |
|