Sequencing and analysis of the complete mitochondrial genome of the lesser bandicoot rat (Bandicota bengalensis) from China and its phylogenetic analysis
| Autor: | Zhang Jun-Sheng, Jiang Wen-Jing, Yao Qian-Qian, Liu Zhu, Piao Zhong-Wan, Zhao Xin-Xu, Wang Qing-Qing, Jiang Xue-Ting |
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| Rok vydání: | 2021 |
| Předmět: |
0106 biological sciences
0301 basic medicine Genetics Mitochondrial DNA mitogenome biology Phylogenetic tree Bandicota biology.organism_classification Bandicota bengalensis 010603 evolutionary biology 01 natural sciences Genome Bandicoot phylogenetic trees 03 medical and health sciences Control region 030104 developmental biology Heavy strand Molecular Biology Gene Mitogenome Announcement Research Article |
| Zdroj: | Mitochondrial DNA. Part B, Resources article-version (VoR) Version of Record |
| ISSN: | 2380-2359 |
| DOI: | 10.1080/23802359.2021.1942273 |
| Popis: | The complete mitogenome sequence of the lesser bandicoot rat (Bandicota bengalensis Gray and Hardwicke, 1833) was determined using long PCR. The genome was 16,327 bp in length and contained 13 protein-coding genes, 2 ribosomal RNA genes, 22 transfer RNA genes, 1 origin of L strand replication and 1 control region. The overall base composition of the heavy strand is A (34.2%), C (24.9%), T (28.5%) and G (12.4%). The base compositions present clearly the A–T skew, which is most obviously in the control region and protein-coding genes. Mitochondrial genome analyses based on MP, ML, NJ and Bayesian analyses yielded identical phylogenetic trees. This study verifies the evolutionary status of Bandicota bengalensis in Muridae at the molecular level. The mitochondrial genome would be a significant supplement for the Bandicota bengalensis genetic background. The two Bandicota species formed a monophyletic group with the high bootstrap value (100%) in all examinations. |
| Databáze: | OpenAIRE |
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